Histone_ChIP-seq_ENCSR955IXZ
Histone_ChIP-seq ENCSR955IXZ [biosample_summary="Homo sapiens KMS-11" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR955IXZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR955IXZ [biosamplesummary="Homo sapiens KMS-11" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN157DFN|/analyses/ENCAN157DFN/} has in progress subobject document {9b522814-e30e-4250-9a29-592aa68a45ea|/documents/9b522814-e30e-4250-9a29-592aa68a45ea/} audit_internal_action: Released analysis {ENCAN157DFN|/analyses/ENCAN157DFN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF433QGW|/files/ENCFF433QGW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF433QGW|/files/ENCFF433QGW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF028BMC|/files/ENCFF028BMC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF028BMC|/files/ENCFF028BMC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR955IXZ | float |
Histone_ChIP-seq_ENCSR955IXZ |
Histone_ChIP-seq ENCSR955IXZ [biosample_summary="Homo sapiens KMS-11" and target="H3K27ac"]
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[1.45, 48.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF798EKP.bed.gz | 961.46 KB | 137ae1a067250201678b99a6d7f22399 |
| ENCFF798EKP.bed.gz.dvc | 100.0 B | ec468aa45aee949b5d9142dde61d178c |
| ENCFF798EKP.tabix.bed.gz | 404.72 KB | 0b1813dcb48e4bce25ffe1222112ad7b |
| ENCFF798EKP.tabix.bed.gz.dvc | 106.0 B | c6cad92a681b235764d9ca60e7dca023 |
| ENCFF798EKP.tabix.bed.gz.tbi | 186.35 KB | def37380fb18b3f29a7c2c00ec796ad1 |
| ENCFF798EKP.tabix.bed.gz.tbi.dvc | 110.0 B | 37980ece9cf4d2159439be3a4ef00e89 |
| genomic_resource.yaml | 4.22 KB | 0033e87995acc1e2926019bda0bfcb50 |
| genomic_resource_original.yaml | 4.11 KB | e4e515c7d93965a5962735bcc2c1b102 |
| statistics/ |