Resource
| Id | Histone_ChIP-seq/ENCSR954ZUG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR954ZUG [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN378MQZ|/analyses/ENCAN378MQZ/} has in progress subobject document {b5bbff02-8e92-4881-b2b9-6bd56bf8bc96|/documents/b5bbff02-8e92-4881-b2b9-6bd56bf8bc96/} audit_internal_action: Released analysis {ENCAN378MQZ|/analyses/ENCAN378MQZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF243CLW|/files/ENCFF243CLW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21161578 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR954ZUG | float |
Histone_ChIP-seq_ENCSR954ZUG |
Histone_ChIP-seq ENCSR954ZUG [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K27me3"]
|
 |
[2.08, 57.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56888070 | 1.77% | 111779 |
| chr1 | 5138656 | 2.06% | 9914 |
| chr2 | 3193794 | 1.32% | 6093 |
| chr3 | 1990642 | 1.00% | 3962 |
| chr4 | 1626968 | 0.86% | 2588 |
| chr5 | 2495299 | 1.37% | 4375 |
| chr6 | 2562776 | 1.50% | 4728 |
| chr7 | 2245781 | 1.41% | 3932 |
| chr8 | 1914734 | 1.32% | 3649 |
| chr9 | 2235280 | 1.62% | 3959 |
| chr10 | 2681920 | 2.00% | 5199 |
| chr11 | 2934006 | 2.17% | 5822 |
| chr12 | 2280806 | 1.71% | 4279 |
| chr13 | 992493 | 0.87% | 1837 |
| chr14 | 1434804 | 1.34% | 2712 |
| chr15 | 1591086 | 1.56% | 3155 |
| chr16 | 2237424 | 2.48% | 3847 |
| chr17 | 3536341 | 4.25% | 5887 |
| chr18 | 769426 | 0.96% | 1559 |
| chr19 | 2364867 | 4.03% | 3516 |
| chr20 | 2125150 | 3.30% | 4078 |
| chr21 | 599094 | 1.28% | 1246 |
| chr22 | 1641488 | 3.23% | 3224 |
| chrX | 8295235 | 5.32% | 22218 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111779 | 170 | 26185 | 508.93 | 316 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF672MZK.bed.gz | 1.93 MB | b6cd5972be841a4feff52b70b7fedf3b |
| ENCFF672MZK.tabix.bed.gz | 1010.4 KB | 6abd9e4661c3c1b773b8a35b4a0a60a1 |
| ENCFF672MZK.tabix.bed.gz.tbi | 225.73 KB | fbf363823ff4d522b8d8532dc987151c |
| genomic_resource.yaml | 2.23 KB | 4c0e4e042492ac0707024aa45bdcb73a |
| statistics/ |