Resource

Id Histone_ChIP-seq/ENCSR953GFWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR953GFW [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR953GFW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018112/
  • biosample_summary: Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)
  • date_created: 2015-09-15T19:51:41.414123+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR953GFW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (50 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR953GFW float

Histone_ChIP-seq_ENCSR953GFW
Histone_ChIP-seq ENCSR953GFW [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR953GFW [1.88, 63.8]
n
44,322,246
mean
17.9
sd
10.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 443222461.38% 45585
chr1 4479557 1.80% 4541
chr2 3036028 1.25% 3139
chr3 2480766 1.25% 2427
chr4 1771146 0.93% 1714
chr5 2046071 1.13% 1970
chr6 2509187 1.47% 2401
chr7 2185483 1.37% 2310
chr8 1598144 1.10% 1667
chr9 1888560 1.36% 2020
chr10 1936061 1.45% 2064
chr11 2454867 1.82% 2387
chr12 2330652 1.75% 2319
chr13 886375 0.78% 948
chr14 1461961 1.37% 1478
chr15 1459854 1.43% 1473
chr16 1765037 1.95% 1877
chr17 2666892 3.20% 2766
chr18 736151 0.92% 785
chr19 2873457 4.90% 3167
chr20 1139082 1.77% 1227
chr21 416323 0.89% 478
chr22 1018798 2.00% 1107
chrX 1181794 0.76% 1320
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45585 155 17375 972.3 665
global segment-length histogram

Files

Filename Size md5
ENCFF520EAZ.bed.gz 1.08 MB 2a5129b39e312575642c130fb324f6be
ENCFF520EAZ.tabix.bed.gz 493.54 KB 8447c5ae26d3ba40c98c757b17e89043
ENCFF520EAZ.tabix.bed.gz.tbi 197.69 KB 9dbe28f9475b9d9a11085f7f167938a9
genomic_resource.yaml 1.92 KB bcbdd3c5999f7e7b70c37260249b2d62
statistics/