Histone_ChIP-seq_ENCSR952GVX
Histone_ChIP-seq ENCSR952GVX [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR952GVX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR952GVX [biosamplesummary="Homo sapiens H1" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN133AOB|/analyses/ENCAN133AOB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF912QYY|/files/ENCFF912QYY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9843958 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF330CZC|/files/ENCFF330CZC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11122914 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF912QYY|/files/ENCFF912QYY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF912QYY|/files/ENCFF912QYY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR952GVX | float |
Histone_ChIP-seq_ENCSR952GVX |
Histone_ChIP-seq ENCSR952GVX [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
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[2.01, 87.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF073SMR.bed.gz | 639.7 KB | cce9f78946367459350a34f93d2a105c |
| ENCFF073SMR.bed.gz.dvc | 100.0 B | 6e2f402314e34e2973d20251d9112677 |
| ENCFF073SMR.tabix.bed.gz | 322.49 KB | b8e56a50a8696f06f35259ba71e1dd94 |
| ENCFF073SMR.tabix.bed.gz.dvc | 106.0 B | 9a569b27a3d7893e5ba4c9f7a465b5e3 |
| ENCFF073SMR.tabix.bed.gz.tbi | 150.7 KB | 65b4d83ed0459fc698aeba6b39169007 |
| ENCFF073SMR.tabix.bed.gz.tbi.dvc | 110.0 B | 3019da40b5439e3a1dc8f7de5c13c5b1 |
| genomic_resource.yaml | 3.64 KB | 7c13793662a873e3d845c99ff9fd68ef |
| genomic_resource_original.yaml | 3.54 KB | 0329460c454d2ca7a77c577992444def |
| statistics/ |