Resource

Id Histone_ChIP-seq/ENCSR949HMJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR949HMJ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR949HMJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:46.557213+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR949HMJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR949HMJ float

Histone_ChIP-seq_ENCSR949HMJ
Histone_ChIP-seq ENCSR949HMJ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR949HMJ [1.79, 13.4]
n
35,910,157
mean
4.75
sd
1.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 359101571.12% 41193
chr1 3721638 1.49% 4346
chr2 2444499 1.01% 2923
chr3 1104405 0.56% 1432
chr4 1463975 0.77% 1502
chr5 1608664 0.89% 1873
chr6 1462924 0.86% 1758
chr7 1755005 1.10% 1909
chr8 1174261 0.81% 1447
chr9 1822347 1.32% 1992
chr10 2107843 1.58% 2445
chr11 2534513 1.88% 2909
chr12 1587677 1.19% 1782
chr13 761970 0.67% 864
chr14 938027 0.88% 1115
chr15 848522 0.83% 1083
chr16 1691704 1.87% 1843
chr17 2200229 2.64% 2491
chr18 618103 0.77% 764
chr19 2112904 3.60% 2285
chr20 1937425 3.01% 2160
chr21 586686 1.26% 636
chr22 1298941 2.56% 1476
chrX 127133 0.08% 157
chrY 762 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41193 230 10745 871.75 692
global segment-length histogram

Files

Filename Size md5
ENCFF701DWL.bed.gz 823.68 KB ecaa75b063e9d17b532f98e91a281180
ENCFF701DWL.tabix.bed.gz 417.28 KB fab6ec1c7d2b8dc3633721f7cee86c83
ENCFF701DWL.tabix.bed.gz.tbi 121.83 KB a51533618e6a9f28036abfd69f44c476
genomic_resource.yaml 2.0 KB 820bab341468e9a1b0911ccdcb8e1084
statistics/