Resource

Id Histone_ChIP-seq/ENCSR946LTRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR946LTR [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR946LTR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2022-05-11T01:54:56.584341+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR946LTR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR946LTR float

Histone_ChIP-seq_ENCSR946LTR
Histone_ChIP-seq ENCSR946LTR [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR946LTR [1.8, 52.7]
n
116,966,224
mean
9.69
sd
6.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1169662243.64% 95646
chr1 12064592 4.85% 9445
chr2 8430605 3.48% 7047
chr3 6756402 3.41% 5623
chr4 4350905 2.29% 3633
chr5 5773005 3.18% 4824
chr6 5841310 3.42% 4728
chr7 5306217 3.33% 4673
chr8 4348928 3.00% 3738
chr9 5775547 4.17% 4559
chr10 5911085 4.42% 4726
chr11 7241163 5.36% 5639
chr12 5790827 4.35% 4775
chr13 2621679 2.29% 2138
chr14 3979948 3.72% 3154
chr15 3984690 3.91% 3297
chr16 4433029 4.91% 3727
chr17 7101364 8.53% 5547
chr18 2125011 2.64% 1840
chr19 5550382 9.47% 4403
chr20 3544517 5.50% 2935
chr21 1242842 2.66% 1090
chr22 3141525 6.18% 2607
chrX 1650651 1.06% 1498
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95646 190 53253 1222.91 753
global segment-length histogram

Files

Filename Size md5
ENCFF243CHP.bed.gz 1.94 MB 8ac957b91d6111a3bfdb20710f04f6ce
ENCFF243CHP.tabix.bed.gz 959.77 KB 72ddf98acb7352aaf496aa6f418fae89
ENCFF243CHP.tabix.bed.gz.tbi 257.88 KB 66cde9c13b850dac2733b4f7a3999164
genomic_resource.yaml 1.7 KB 3c6ae7d8cc02a0f8186b8d07e043bdb2
statistics/