Resource

Id Histone_ChIP-seq/ENCSR943TBHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR943TBH [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR943TBH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:51.024162+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR943TBH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR943TBH float

Histone_ChIP-seq_ENCSR943TBH
Histone_ChIP-seq ENCSR943TBH [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR943TBH [1.69, 42.5]
n
49,727,821
mean
18.1
sd
9.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 497278211.55% 33481
chr1 4784148 1.92% 3196
chr2 3540104 1.46% 2397
chr3 3002082 1.51% 1972
chr4 2116852 1.11% 1423
chr5 2556252 1.41% 1702
chr6 2938161 1.72% 1992
chr7 2430961 1.53% 1725
chr8 1991859 1.37% 1337
chr9 2065427 1.49% 1444
chr10 2179465 1.63% 1500
chr11 2638334 1.95% 1702
chr12 2582341 1.94% 1673
chr13 1199364 1.05% 858
chr14 1600251 1.49% 1046
chr15 1543511 1.51% 1039
chr16 1875365 2.08% 1276
chr17 2648154 3.18% 1712
chr18 989472 1.23% 691
chr19 2851178 4.86% 1918
chr20 1248528 1.94% 853
chr21 495221 1.06% 355
chr22 1040538 2.05% 696
chrX 1410253 0.90% 974
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33481 220 23136 1485.25 1088
global segment-length histogram

Files

Filename Size md5
ENCFF239JWB.bed.gz 832.45 KB a70d15b0f38a9a183fe3bc556342d206
ENCFF239JWB.tabix.bed.gz 376.82 KB 827cfef4e44da27dbc10df9b9438dde5
ENCFF239JWB.tabix.bed.gz.tbi 195.83 KB ecf33c56318c109c49e6c1a19f286397
genomic_resource.yaml 1.77 KB ea96071afe5379f3a846557652919877
statistics/