Resource

Id Histone_ChIP-seq/ENCSR943LZXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR943LZX [biosample_summary="Homo sapiens PC-3" and target="H3K9me2"]
Description
Labels
  • accession: ENCSR943LZX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:41:17.187666+00:00
  • date_released: 2016-11-09
  • doi: 10.17989/ENCSR943LZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR943LZX float

Histone_ChIP-seq_ENCSR943LZX

Histone_ChIP-seq ENCSR943LZX [biosample_summary="Homo sapiens PC-3" and target="H3K9me2"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR943LZX [1.45, 3.91]
n
1,018,720
mean
2.38
sd
0.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 10187200.03% 2592
chr1 126049 0.05% 311
chr2 92069 0.04% 238
chr3 81967 0.04% 220
chr4 39073 0.02% 103
chr5 70562 0.04% 192
chr6 24121 0.01% 64
chr7 25944 0.02% 72
chr8 190145 0.13% 457
chr9 1567 <0.01% 5
chr10 127179 0.10% 288
chr11 48016 0.04% 133
chr12 55128 0.04% 146
chr13 7047 0.01% 18
chr14 37508 0.04% 96
chr15 12514 0.01% 32
chr16 1071 <0.01% 3
chr17 19129 0.02% 53
chr18 17322 0.02% 47
chr19 2383 <0.01% 6
chr20 20491 0.03% 53
chr21 15898 0.03% 45
chr22 411 <0.01% 1
chrX 3126 <0.01% 9
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2592 198 1263 393.02 362
global segment-length histogram

Files

Filename Size md5
ENCFF632KWA.bed.gz 60.81 KB a78bcdea9168ba47a54637821ef5686e
ENCFF632KWA.tabix.bed.gz 28.46 KB 0b03ebe4f9c9c2c5bd3d8ae898e8af43
ENCFF632KWA.tabix.bed.gz.tbi 28.21 KB f98e5065de7629c4e3d8b456498dcb84
genomic_resource.yaml 1.58 KB b1d83cf6fc23b6e8df191804c3a27f16
statistics/