Histone_ChIP-seq_ENCSR940FNL
Histone_ChIP-seq ENCSR940FNL [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR940FNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR940FNL [biosamplesummary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN032LIN|/analyses/ENCAN032LIN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF351JIG|/files/ENCFF351JIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 42593685 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF351JIG|/files/ENCFF351JIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF351JIG|/files/ENCFF351JIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR940FNL | float |
Histone_ChIP-seq_ENCSR940FNL |
Histone_ChIP-seq ENCSR940FNL [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27me3"]
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[1.57, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF763MDJ.bed.gz | 384.6 KB | 9016828b65a65c03091bd27be38909ab |
| ENCFF763MDJ.bed.gz.dvc | 100.0 B | 80493d83075d93c715a4ec299eb1a85b |
| ENCFF763MDJ.tabix.bed.gz | 193.48 KB | 2c115aa6d508488ee36220e81478ac37 |
| ENCFF763MDJ.tabix.bed.gz.dvc | 106.0 B | 2ed9ea36202d1922a194de2dbe3d2e20 |
| ENCFF763MDJ.tabix.bed.gz.tbi | 81.05 KB | 87e17999c6cb1f889146d234c0d1ed87 |
| ENCFF763MDJ.tabix.bed.gz.tbi.dvc | 109.0 B | 868f6d071e48958b65cc4dae5a36ea93 |
| genomic_resource.yaml | 3.24 KB | c4ede3f98023c4969c4be55656c8221f |
| genomic_resource_original.yaml | 3.1 KB | 129cca5b6ca6982b9d6223a84b08f46c |
| statistics/ |