Resource

Id Histone_ChIP-seq/ENCSR939UQDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR939UQD [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR939UQD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000236/
  • biosample_summary: Homo sapiens B cell male adult (37 years)
  • date_created: 2015-09-16T21:42:01.424346+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR939UQD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR939UQD float

Histone_ChIP-seq_ENCSR939UQD
Histone_ChIP-seq ENCSR939UQD [biosample_summary="Homo sapiens B cell male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR939UQD [1.85, 104]
n
28,281,452
mean
37.3
sd
21.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 282814520.88% 23830
chr1 2807740 1.13% 2406
chr1_KI270713v1_random 443 1.09% 2
chr2 1881289 0.78% 1586
chr3 1505930 0.76% 1231
chr4 1014643 0.53% 822
chr5 1265244 0.70% 973
chr6 1804640 1.06% 1459
chr7 1332393 0.84% 1174
chr8 1018970 0.70% 886
chr9 1078645 0.78% 942
chr10 1132039 0.85% 979
chr11 1516188 1.12% 1214
chr12 1533127 1.15% 1240
chr13 556360 0.49% 494
chr14 964434 0.90% 788
chr15 895369 0.88% 741
chr16 1148000 1.27% 1006
chr17 1726299 2.07% 1453
chr17_GL000205v2_random 1660 0.89% 1
chr18 441497 0.55% 404
chr19 2019775 3.45% 1684
chr20 720453 1.12% 669
chr21 264853 0.57% 247
chr22 670290 1.32% 620
chrUn_GL000219v1 1644 0.92% 2
chrUn_GL000220v1 351 0.22% 1
chrX 940014 0.60% 778
chrY 39162 0.07% 28
3338 contigs with no values (128509749 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23830 195 12357 1186.8 991
global segment-length histogram

Files

Filename Size md5
ENCFF864GTQ.bed.gz 654.28 KB b75caa21cd92cac949aa35c34126fa5f
ENCFF864GTQ.tabix.bed.gz 276.05 KB d2f0865b9664ba4c75ccf22c350748eb
ENCFF864GTQ.tabix.bed.gz.tbi 137.67 KB eb0b91977dca297ecedd118c9aa6fe85
genomic_resource.yaml 1.47 KB 56df0ad45537c214c61ca716e90eaf98
statistics/