Histone_ChIP-seq_ENCSR939RLS
Histone_ChIP-seq ENCSR939RLS [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR939RLS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR939RLS [biosamplesummary="Homo sapiens thoracic aorta tissue male adult (37 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN007ITH|/analyses/ENCAN007ITH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF334HSI|/files/ENCFF334HSI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 25409712 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF574MYW|/files/ENCFF574MYW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27401238 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF574MYW|/files/ENCFF574MYW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF574MYW|/files/ENCFF574MYW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR939RLS | float |
Histone_ChIP-seq_ENCSR939RLS |
Histone_ChIP-seq ENCSR939RLS [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)" and target="H3K27me3"]
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[1.31, 9.23] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF353HTX.bed.gz | 103.28 KB | 186ded290da4c493a6dfeb15eb0d9324 |
| ENCFF353HTX.bed.gz.dvc | 100.0 B | 241515ee00a132cc8b3708228a93c873 |
| ENCFF353HTX.tabix.bed.gz | 54.23 KB | c3c55047914795f341a50019b4ff6703 |
| ENCFF353HTX.tabix.bed.gz.dvc | 105.0 B | d334a1f8229c2b8ef9536dbd2ef06ff8 |
| ENCFF353HTX.tabix.bed.gz.tbi | 33.72 KB | 7da03973682ad7f6255c9a68bc53787a |
| ENCFF353HTX.tabix.bed.gz.tbi.dvc | 109.0 B | 3e40a458c2f6a7cb7760d2e0e4add9bd |
| genomic_resource.yaml | 3.72 KB | 9a7c20fc087d83abc4944ba67333f8d7 |
| genomic_resource_original.yaml | 3.58 KB | 2817cbe9dcd06dedad05d677c74df6d3 |
| statistics/ |