Resource

Id Histone_ChIP-seq/ENCSR939CJEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR939CJE [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR939CJE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)
  • date_created: 2019-04-27T23:14:50.183254+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR939CJE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR939CJE float

Histone_ChIP-seq_ENCSR939CJE
Histone_ChIP-seq ENCSR939CJE [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR939CJE [1.22, 30]
n
82,877,245
mean
4.93
sd
2.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 828772452.58% 72076
chr1 5875424 2.36% 5350
chr2 6237928 2.58% 6018
chr3 5144546 2.59% 4844
chr4 5148725 2.71% 4961
chr5 6107852 3.36% 5194
chr6 4440488 2.60% 4211
chr7 5417481 3.40% 4446
chr8 4522296 3.12% 4063
chr9 3053775 2.21% 2740
chr10 4156662 3.11% 3550
chr11 4089430 3.03% 3406
chr12 4477976 3.36% 3620
chr13 2205943 1.93% 2266
chr14 2582142 2.41% 2431
chr15 2139714 2.10% 1882
chr16 2750514 3.04% 2308
chr17 1538573 1.85% 1393
chr18 1856664 2.31% 1875
chr19 6140186 10.47% 2922
chr20 1649390 2.56% 1535
chr21 1232475 2.64% 1043
chr22 929539 1.83% 764
chrX 1010761 0.65% 1064
chrY 168761 0.29% 190
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72076 235 60595 1149.86 839
global segment-length histogram

Files

Filename Size md5
ENCFF229CLY.bed.gz 1.52 MB 113f9ac3c16916e7391c697b491b5e19
ENCFF229CLY.tabix.bed.gz 755.45 KB ceed2c46abdb29a2f06bc8a2a2d7ce85
ENCFF229CLY.tabix.bed.gz.tbi 309.12 KB 81690006dda7d0ca011ef0a419f3369a
genomic_resource.yaml 1.55 KB 6b57372fc149326c849a5913a4d84b16
statistics/