Resource

Id Histone_ChIP-seq/ENCSR936LAHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR936LAH [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR936LAH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (51 years)
  • date_created: 2019-04-27T23:38:54.525997+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR936LAH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR936LAH float

Histone_ChIP-seq_ENCSR936LAH
Histone_ChIP-seq ENCSR936LAH [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR936LAH [1.28, 14.6]
n
76,726,730
mean
4.01
sd
1.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 767267302.38% 73757
chr1 4358257 1.75% 4592
chr1_KI270706v1_random 270 0.15% 1
chr1_KI270709v1_random 13291 19.88% 16
chr1_KI270712v1_random 1116 0.63% 2
chr2 4964220 2.05% 5245
chr2_KI270716v1_random 7594 4.94% 3
chr3 4215119 2.13% 4569
chr4 4693119 2.47% 4990
chr4_GL000008v2_random 5412 2.58% 2
chr5 5214804 2.87% 4923
chr5_GL000208v1_random 14109 15.22% 18
chr6 3518879 2.06% 3865
chr7 5213962 3.27% 4749
chr8 3788679 2.61% 3704
chr9 2468565 1.78% 2549
chr9_KI270719v1_random 4910 2.78% 7
chr9_KI270720v1_random 383 0.98% 1
chr10 3444991 2.57% 3091
chr11 3414604 2.53% 3210
chr12 3728907 2.80% 3368
chr13 1941055 1.70% 2207
chr14 1948087 1.82% 2082
chr14_GL000009v2_random 386 0.19% 1
chr14_GL000194v1_random 2607 1.36% 3
chr14_GL000225v1_random 71888 34.04% 54
chr14_KI270722v1_random 339 0.17% 1
chr14_KI270723v1_random 1217 3.19% 2
chr14_KI270725v1_random 2409 1.39% 5
chr15 1773384 1.74% 1750
chr16 2085527 2.31% 1913
chr16_KI270728v1_random 709 0.04% 2
chr17 1162093 1.40% 1112
chr17_GL000205v2_random 15861 8.55% 11
chr17_KI270729v1_random 113779 40.51% 34
chr17_KI270730v1_random 25226 22.41% 9
chr18 1449236 1.80% 1588
chr19 6106406 10.42% 3147
chr20 1352711 2.10% 1406
chr21 965487 2.07% 923
chr22 692881 1.36% 704
chr22_KI270732v1_random 7776 18.72% 10
chr22_KI270735v1_random 10522 24.58% 10
chr22_KI270736v1_random 141697 77.89% 30
chr22_KI270737v1_random 513 0.49% 1
chr22_KI270738v1_random 39484 39.73% 32
chrUn_GL000214v1 1083 0.79% 3
chrUn_GL000216v2 4983 2.82% 7
chrUn_GL000218v1 1508 0.94% 3
chrUn_GL000219v1 13241 7.39% 17
chrUn_GL000224v1 21852 12.16% 11
chrUn_KI270320v1 707 16.01% 1
chrUn_KI270322v1 513 2.39% 1
chrUn_KI270420v1 407 17.54% 1
chrUn_KI270429v1 535 39.31% 1
chrUn_KI270435v1 12709 13.67% 11
chrUn_KI270438v1 58642 52.12% 31
chrUn_KI270442v1 169797 43.31% 96
chrUn_KI270448v1 1191 14.90% 2
chrUn_KI270465v1 464 26.16% 1
chrUn_KI270467v1 253 6.45% 1
chrUn_KI270468v1 1709 42.15% 1
chrUn_KI270507v1 2053 38.35% 3
chrUn_KI270508v1 1626 83.34% 2
chrUn_KI270509v1 1366 58.93% 2
chrUn_KI270510v1 771 31.93% 1
chrUn_KI270511v1 2199 27.06% 2
chrUn_KI270512v1 4146 18.27% 5
chrUn_KI270515v1 905 14.23% 2
chrUn_KI270516v1 627 48.23% 1
chrUn_KI270517v1 1194 36.70% 1
chrUn_KI270518v1 458 20.95% 1
chrUn_KI270519v1 25783 18.67% 35
chrUn_KI270522v1 2483 43.76% 1
chrUn_KI270538v1 14094 15.44% 20
chrUn_KI270580v1 903 58.15% 1
chrUn_KI270583v1 1171 83.64% 1
chrUn_KI270584v1 1588 35.19% 2
chrUn_KI270588v1 1648 26.76% 3
chrUn_KI270589v1 3535 7.95% 2
chrUn_KI270590v1 2774 59.21% 3
chrUn_KI270591v1 4796 82.75% 2
chrUn_KI270741v1 601 0.38% 1
chrUn_KI270742v1 453 0.24% 1
chrUn_KI270743v1 1149 0.55% 3
chrUn_KI270744v1 4290 2.55% 5
chrUn_KI270746v1 2202 3.31% 3
chrUn_KI270747v1 1160 0.58% 1
chrUn_KI270749v1 2428 1.53% 4
chrUn_KI270750v1 3460 2.32% 5
chrUn_KI270751v1 5964 3.96% 8
chrUn_KI270753v1 618 0.98% 1
chrUn_KI270754v1 399 0.99% 1
chrUn_KI270756v1 9216 11.58% 6
chrUn_KI270757v1 10647 14.94% 9
chrX 7299960 4.68% 7460
chrY 37998 0.07% 29
3270 contigs with no values (120516764 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73757 225 64888 1040.26 757
global segment-length histogram

Files

Filename Size md5
ENCFF834NIN.bed.gz 1.47 MB 5a066c0985978a668a1f54611fabae64
ENCFF834NIN.tabix.bed.gz 752.83 KB 164f6204e32748f8956efe5a8f803820
ENCFF834NIN.tabix.bed.gz.tbi 307.64 KB b74c8ce13e301ba7db3269cd7d57e23f
genomic_resource.yaml 1.53 KB 840916943ed322c842874d7850a25007
statistics/