Resource

Id Histone_ChIP-seq/ENCSR936FAHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR936FAH [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR936FAH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:11.808555+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR936FAH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO308YQF) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR724XIL).
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR936FAH float

Histone_ChIP-seq_ENCSR936FAH
Histone_ChIP-seq ENCSR936FAH [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR936FAH [1.83, 63.5]
n
28,638,710
mean
14.1
sd
8.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 286387100.89% 45438
chr1 2698498 1.08% 4124
chr1_KI270709v1_random 187 0.28% 1
chr1_KI270713v1_random 235 0.58% 1
chr2 2036230 0.84% 3193
chr3 1776470 0.90% 2658
chr4 1334043 0.70% 2064
chr4_GL000008v2_random 757 0.36% 2
chr5 1454616 0.80% 2255
chr6 1806821 1.06% 2719
chr7 1363639 0.86% 2171
chr8 1096274 0.76% 1814
chr9 1173230 0.85% 1899
chr9_KI270718v1_random 247 0.65% 1
chr9_KI270720v1_random 593 1.52% 1
chr10 1293830 0.97% 2150
chr11 1474515 1.09% 2239
chr12 1572084 1.18% 2410
chr13 668535 0.58% 1078
chr14 928203 0.87% 1380
chr14_KI270722v1_random 502 0.26% 3
chr15 912979 0.90% 1423
chr16 962580 1.07% 1598
chr17 1501862 1.80% 2410
chr17_GL000205v2_random 1072 0.58% 3
chr17_KI270729v1_random 3780 1.35% 11
chr17_KI270730v1_random 610 0.54% 2
chr18 560841 0.70% 991
chr19 1748879 2.98% 2977
chr20 673210 1.04% 1103
chr21 275407 0.59% 490
chr22 505939 1.00% 847
chr22_KI270736v1_random 14737 8.10% 42
chrUn_GL000216v2 3075 1.74% 10
chrUn_GL000219v1 1244 0.69% 2
chrUn_GL000220v1 207 0.13% 1
chrUn_GL000224v1 141 0.08% 1
chrUn_KI270438v1 1392 1.24% 5
chrUn_KI270442v1 7125 1.82% 18
chrUn_KI270511v1 222 2.73% 1
chrUn_KI270589v1 1184 2.66% 2
chrUn_KI270591v1 296 5.11% 1
chrUn_KI270746v1 276 0.42% 1
chrUn_KI270751v1 351 0.23% 1
chrX 779379 0.50% 1328
chrY 2413 <0.01% 7
3321 contigs with no values (126250224 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45438 125 8590 630.28 423
global segment-length histogram

Files

Filename Size md5
ENCFF723CUO.bed.gz 1015.4 KB 7226d2c3b707caac66e977c49f002d57
ENCFF723CUO.tabix.bed.gz 472.49 KB 8d7e7496c22ced06c3636856db1db949
ENCFF723CUO.tabix.bed.gz.tbi 195.07 KB 7eef2bb014c66628c90a09b984e9ceaa
genomic_resource.yaml 1.75 KB 362b1869adb4d13adfbb62ebe3238ce6
statistics/