| Id: | Histone_ChIP-seq/ENCSR935EPK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR935EPK [biosamplesummary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) with mild cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN100DZR|/analyses/ENCAN100DZR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF331TRV|/files/ENCFF331TRV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF331TRV|/files/ENCFF331TRV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.00. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR935EPK | float |
Histone_ChIP-seq_ENCSR935EPK |
Histone_ChIP-seq ENCSR935EPK [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K4me3"]
|
 |
[1.76, 86.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF009QWW.bed.gz | 1005.13 KB | bdffdb37748fc96bcf60e01116d44756 |
| ENCFF009QWW.bed.gz.dvc | 101.0 B | 3582977f66a760e358b99dabbac003c2 |
| ENCFF009QWW.tabix.bed.gz | 444.21 KB | d4a0467fb9db2d2270b46e44bd88a43c |
| ENCFF009QWW.tabix.bed.gz.dvc | 106.0 B | d4938e527da5ec67b58601f680da9d6f |
| ENCFF009QWW.tabix.bed.gz.tbi | 223.47 KB | 0f6382af501c2e8ed24af7e1e69d00e0 |
| ENCFF009QWW.tabix.bed.gz.tbi.dvc | 110.0 B | f6a586c3ebcd7d5c97cc795a0ba1f4db |
| genomic_resource.yaml | 2.99 KB | 83083f12b9b0c6c0429e8d3ba66693b4 |
| genomic_resource_original.yaml | 2.8 KB | 48ff01982ddaa691419c849cc929c140 |
| statistics/ |