Histone_ChIP-seq_ENCSR933MQW
Histone_ChIP-seq ENCSR933MQW [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR933MQW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR933MQW [biosamplesummary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN002HNQ|/analyses/ENCAN002HNQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF591YNK|/files/ENCFF591YNK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF591YNK|/files/ENCFF591YNK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR933MQW | float |
Histone_ChIP-seq_ENCSR933MQW |
Histone_ChIP-seq ENCSR933MQW [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K36me3"]
|
|
[1.62, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF616HZY.bed.gz | 1.9 MB | 29c642292701cf28dcee50c1b1b586c4 |
| ENCFF616HZY.bed.gz.dvc | 101.0 B | 8d065b7d4d3afb4f8244dcdb66c76d58 |
| ENCFF616HZY.tabix.bed.gz | 903.37 KB | d115140f298f185dc4ce2417533c5b50 |
| ENCFF616HZY.tabix.bed.gz.dvc | 106.0 B | 88e412d871b165081071cdafd497fe7e |
| ENCFF616HZY.tabix.bed.gz.tbi | 142.41 KB | d0e1dd0c70eba9fea50af7b2c969e140 |
| ENCFF616HZY.tabix.bed.gz.tbi.dvc | 110.0 B | c11259a5dc13e49cf1ae58d8625d3fe3 |
| genomic_resource.yaml | 2.81 KB | 939258b1f3a2fd250eff4fdb197fb643 |
| genomic_resource_original.yaml | 2.66 KB | 83a809dbac4a1b692e3925beb8afd7df |
| statistics/ |