Resource

Id Histone_ChIP-seq/ENCSR933BVLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR933BVL [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR933BVL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (53 years)
  • date_created: 2017-01-24T04:38:37.833677+00:00
  • date_released: 2017-01-30
  • doi: 10.17989/ENCSR933BVL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR933BVL float

Histone_ChIP-seq_ENCSR933BVL
Histone_ChIP-seq ENCSR933BVL [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR933BVL [1.51, 10.5]
n
21,376,534
mean
4.71
sd
1.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 213765340.66% 21252
chr1 2124997 0.85% 2115
chr2 1501397 0.62% 1459
chr3 1232317 0.62% 1153
chr4 895721 0.47% 831
chr5 1015723 0.56% 927
chr6 1237760 0.72% 1214
chr7 1048233 0.66% 1043
chr8 769767 0.53% 745
chr9 880902 0.64% 884
chr10 901842 0.67% 841
chr11 1194261 0.88% 1160
chr12 1132054 0.85% 1095
chr13 435902 0.38% 415
chr14 708469 0.66% 696
chr15 708735 0.69% 702
chr16 857034 0.95% 883
chr17 1268972 1.52% 1304
chr17_GL000205v2_random 1560 0.84% 2
chr18 342571 0.43% 328
chr19 1368286 2.33% 1526
chr20 534947 0.83% 540
chr21 194867 0.42% 200
chr22 457992 0.90% 510
chrUn_GL000219v1 1359 0.76% 2
chrX 560866 0.36% 677
3341 contigs with no values (185939711 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21252 230 8924 1005.86 868
global segment-length histogram

Files

Filename Size md5
ENCFF314AAH.bed.gz 568.49 KB dea2ab9857feb8a98edcc2cd5d674eaa
ENCFF314AAH.tabix.bed.gz 242.94 KB a1976ce6d9f43f14370afcf4ecf72eb8
ENCFF314AAH.tabix.bed.gz.tbi 124.33 KB 0e2e9bf600d6c0d7dff9cfc63e2d7812
genomic_resource.yaml 1.52 KB dd3038b6dd8599123a9d9f2366a8a500
statistics/