Resource
| Id | Histone_ChIP-seq/ENCSR932QRC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR932QRC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN689LCB|/analyses/ENCAN689LCB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065CTN|/files/ENCFF065CTN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065CTN|/files/ENCFF065CTN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.52. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR932QRC | float |
Histone_ChIP-seq_ENCSR932QRC |
Histone_ChIP-seq ENCSR932QRC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27ac"]
|
 |
[1.78, 80.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 137013625 | 4.26% | 82005 |
| chr1 | 13527192 | 5.43% | 7851 |
| chr2 | 10605914 | 4.38% | 6575 |
| chr3 | 9384450 | 4.73% | 5415 |
| chr4 | 5930708 | 3.12% | 3679 |
| chr5 | 7576721 | 4.17% | 4502 |
| chr6 | 7604463 | 4.45% | 4789 |
| chr7 | 6083359 | 3.82% | 3852 |
| chr8 | 5902538 | 4.07% | 3725 |
| chr9 | 5859680 | 4.23% | 3470 |
| chr10 | 7546481 | 5.64% | 4353 |
| chr11 | 6988322 | 5.17% | 4204 |
| chr12 | 7254806 | 5.44% | 4151 |
| chr13 | 3364821 | 2.94% | 2123 |
| chr14 | 4265710 | 3.99% | 2524 |
| chr15 | 4979768 | 4.88% | 2905 |
| chr16 | 4460072 | 4.94% | 2712 |
| chr17 | 6868144 | 8.25% | 3811 |
| chr18 | 2998084 | 3.73% | 1819 |
| chr19 | 4796732 | 8.18% | 2738 |
| chr20 | 3649204 | 5.66% | 2160 |
| chr21 | 1370111 | 2.93% | 908 |
| chr22 | 3296151 | 6.49% | 1814 |
| chrX | 2605118 | 1.67% | 1863 |
| chrY | 95076 | 0.17% | 62 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82005 | 225 | 64251 | 1670.8 | 1160 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF380YWT.bed.gz | 2.05 MB | 10ae0ab6b610f68cfe94ee8091f45fdb |
| ENCFF380YWT.tabix.bed.gz | 909.39 KB | 5d9e8b5f1fefa3bf3c02161e58321d90 |
| ENCFF380YWT.tabix.bed.gz.tbi | 260.93 KB | ef9b6fd838537e8a371c2994dc6a3111 |
| genomic_resource.yaml | 2.79 KB | 6740fcc64a8245c750bcb3beaa2aa3b5 |
| statistics/ |