Histone_ChIP-seq_ENCSR932QRC
Histone_ChIP-seq ENCSR932QRC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR932QRC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR932QRC [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN689LCB|/analyses/ENCAN689LCB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065CTN|/files/ENCFF065CTN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065CTN|/files/ENCFF065CTN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR932QRC | float |
Histone_ChIP-seq_ENCSR932QRC |
Histone_ChIP-seq ENCSR932QRC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K27ac"]
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[1.78, 80.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF380YWT.bed.gz | 2.05 MB | 10ae0ab6b610f68cfe94ee8091f45fdb |
| ENCFF380YWT.bed.gz.dvc | 101.0 B | 8cbc9b93bfb5d90a9ea7b6f5d808f0a8 |
| ENCFF380YWT.tabix.bed.gz | 909.39 KB | 5d9e8b5f1fefa3bf3c02161e58321d90 |
| ENCFF380YWT.tabix.bed.gz.dvc | 106.0 B | e0cc8db50964aa27c426259337d275dc |
| ENCFF380YWT.tabix.bed.gz.tbi | 260.93 KB | ef9b6fd838537e8a371c2994dc6a3111 |
| ENCFF380YWT.tabix.bed.gz.tbi.dvc | 110.0 B | 0a9b069c8070d2c21a1e7251185ebd9a |
| genomic_resource.yaml | 2.79 KB | 6740fcc64a8245c750bcb3beaa2aa3b5 |
| genomic_resource_original.yaml | 2.65 KB | b03876c8fc8d53d5a1b036739dae1dbe |
| statistics/ |