Resource
| Id | Histone_ChIP-seq/ENCSR930OZC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR930OZC [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (72 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN923HEN|/analyses/ENCAN923HEN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF540IKN|/files/ENCFF540IKN/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 28850073 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR930OZC | float |
Histone_ChIP-seq_ENCSR930OZC |
Histone_ChIP-seq ENCSR930OZC [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K36me3"]
|
 |
[1.68, 30.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 86394730 | 2.69% | 103968 |
| chr1 | 8991594 | 3.61% | 10318 |
| chr2 | 6824753 | 2.82% | 8263 |
| chr3 | 5390779 | 2.72% | 6740 |
| chr4 | 3050948 | 1.60% | 4199 |
| chr5 | 4094448 | 2.26% | 5253 |
| chr6 | 3833022 | 2.24% | 4907 |
| chr7 | 3678945 | 2.31% | 4691 |
| chr8 | 2708710 | 1.87% | 3505 |
| chr9 | 3788724 | 2.74% | 4416 |
| chr10 | 3979652 | 2.97% | 4959 |
| chr11 | 4426092 | 3.28% | 5126 |
| chr12 | 4869223 | 3.65% | 5625 |
| chr13 | 1608547 | 1.41% | 2272 |
| chr14 | 3041087 | 2.84% | 3739 |
| chr15 | 3244869 | 3.18% | 4031 |
| chr16 | 3953068 | 4.38% | 4369 |
| chr17 | 5083814 | 6.11% | 5677 |
| chr18 | 1426882 | 1.78% | 1952 |
| chr19 | 5269674 | 8.99% | 5486 |
| chr20 | 2569012 | 3.99% | 3024 |
| chr21 | 1027861 | 2.20% | 1205 |
| chr22 | 2420150 | 4.76% | 2598 |
| chrX | 1112876 | 0.71% | 1613 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103968 | 190 | 21527 | 830.97 | 612 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF402HJO.bed.gz | 2.09 MB | 54be5b393607630d4c7cedc6d4ea5281 |
| ENCFF402HJO.tabix.bed.gz | 1.01 MB | 9a47ee440367a7af0a7f44cfae097afd |
| ENCFF402HJO.tabix.bed.gz.tbi | 164.7 KB | cffa837ae6fe1638200945a7d2df3bdf |
| genomic_resource.yaml | 2.05 KB | 5329242c87357b6ad66998278bdb5ab7 |
| statistics/ |