Resource
| Id | Histone_ChIP-seq/ENCSR930HLX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR930HLX [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN409IEW|/analyses/ENCAN409IEW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF502AXL|/files/ENCFF502AXL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR930HLX | float |
Histone_ChIP-seq_ENCSR930HLX |
Histone_ChIP-seq ENCSR930HLX [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me3"]
|
 |
[1.47, 38.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 68860152 | 2.14% | 52897 |
| chr1 | 6597238 | 2.65% | 4863 |
| chr2 | 4960342 | 2.05% | 3973 |
| chr3 | 4215562 | 2.13% | 3340 |
| chr4 | 3170667 | 1.67% | 2568 |
| chr5 | 3460502 | 1.91% | 2783 |
| chr6 | 4127321 | 2.42% | 3183 |
| chr7 | 3313920 | 2.08% | 2543 |
| chr8 | 2698728 | 1.86% | 2212 |
| chr9 | 2942190 | 2.13% | 2312 |
| chr10 | 3300843 | 2.47% | 2726 |
| chr11 | 3558364 | 2.63% | 2538 |
| chr12 | 3706734 | 2.78% | 2791 |
| chr13 | 1613356 | 1.41% | 1350 |
| chr14 | 2090371 | 1.95% | 1577 |
| chr15 | 2225476 | 2.18% | 1717 |
| chr16 | 2480038 | 2.75% | 1871 |
| chr17 | 3521105 | 4.23% | 2464 |
| chr18 | 1293494 | 1.61% | 1075 |
| chr19 | 3730615 | 6.36% | 2679 |
| chr20 | 1694616 | 2.63% | 1302 |
| chr21 | 768467 | 1.65% | 654 |
| chr22 | 1410696 | 2.78% | 1005 |
| chrX | 1913643 | 1.23% | 1331 |
| chrY | 65864 | 0.12% | 40 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52897 | 235 | 30202 | 1301.78 | 847 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF554OEO.bed.gz | 1.39 MB | 7b5e0c49f8c98fe274c9832a662834fe |
| ENCFF554OEO.tabix.bed.gz | 604.18 KB | ce440e927ce5769b720ddb396f92b2df |
| ENCFF554OEO.tabix.bed.gz.tbi | 256.44 KB | f3e5744d359ccf375c804ec2be60683c |
| genomic_resource.yaml | 2.14 KB | 0e60844bfb3b344ff0a1a426ac6e0044 |
| statistics/ |