Resource

Id Histone_ChIP-seq/ENCSR929TODcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR929TOD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR929TOD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:06:48.098378+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR929TOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR929TOD float

Histone_ChIP-seq_ENCSR929TOD
Histone_ChIP-seq ENCSR929TOD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR929TOD [1.75, 48.8]
n
46,020,140
mean
20.6
sd
10.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 460201401.43% 27157
chr1 4496434 1.81% 2659
chr2 3199766 1.32% 1902
chr3 2741804 1.38% 1544
chr4 1884709 0.99% 1062
chr5 2334423 1.29% 1341
chr6 2683690 1.57% 1589
chr7 2209552 1.39% 1364
chr8 1823000 1.26% 1042
chr9 1893843 1.37% 1163
chr10 1989341 1.49% 1157
chr11 2475376 1.83% 1398
chr12 2441386 1.83% 1376
chr13 1066347 0.93% 639
chr14 1479773 1.38% 838
chr15 1436290 1.41% 856
chr16 1747155 1.93% 1064
chr17 2521878 3.03% 1472
chr18 857765 1.07% 510
chr19 2763575 4.71% 1741
chr20 1166052 1.81% 696
chr21 440391 0.94% 271
chr22 1017494 2.00% 621
chrX 1350096 0.87% 852
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27157 220 23724 1694.6 1441
global segment-length histogram

Files

Filename Size md5
ENCFF664JCL.bed.gz 688.47 KB 70f2aa2ae03d4d9208cf40d6d086401a
ENCFF664JCL.tabix.bed.gz 307.94 KB 8cbecdebae7bc6967926b0185753d948
ENCFF664JCL.tabix.bed.gz.tbi 168.94 KB 4c9e1cbbf7d5ba6dbf56a481c5f02416
genomic_resource.yaml 1.75 KB 366bb118a6d8d6202a575962bd1e06e9
statistics/