Histone_ChIP-seq_ENCSR929AXP
Histone_ChIP-seq ENCSR929AXP [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR929AXP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR929AXP [biosamplesummary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN067TVG|/analyses/ENCAN067TVG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF944EAQ|/files/ENCFF944EAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 32711960 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF944EAQ|/files/ENCFF944EAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF944EAQ|/files/ENCFF944EAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR929AXP | float |
Histone_ChIP-seq_ENCSR929AXP |
Histone_ChIP-seq ENCSR929AXP [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27me3"]
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[1.48, 13] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF456XDW.bed.gz | 270.66 KB | 3245fbee2a1da11d0bcc26c0a879ee68 |
| ENCFF456XDW.bed.gz.dvc | 100.0 B | 33df8264ad966261fb72b5e1a29484da |
| ENCFF456XDW.tabix.bed.gz | 140.33 KB | 0c7be239a447c460eff668b42b0c787a |
| ENCFF456XDW.tabix.bed.gz.dvc | 106.0 B | a8fe48f8334cb45e98a4aba591c66157 |
| ENCFF456XDW.tabix.bed.gz.tbi | 65.97 KB | 092e9b9b1c77deb35c65ff26d2faebe5 |
| ENCFF456XDW.tabix.bed.gz.tbi.dvc | 109.0 B | 837d61699bda329c2792ae1ead720b5f |
| genomic_resource.yaml | 3.3 KB | 105989e046c8e54334c1238476983e03 |
| genomic_resource_original.yaml | 3.15 KB | 66ccf29139a6505dc2902a8d49da46a4 |
| statistics/ |