Resource

Id Histone_ChIP-seq/ENCSR928SPEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR928SPE [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR928SPE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-04-30T04:17:56.145680+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR928SPE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR928SPE float

Histone_ChIP-seq_ENCSR928SPE
Histone_ChIP-seq ENCSR928SPE [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR928SPE [1.72, 40.4]
n
46,350,733
mean
15.7
sd
8.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 463507331.44% 31194
chr1 4487136 1.80% 2950
chr2 3318719 1.37% 2263
chr3 2830038 1.43% 1836
chr4 1986527 1.04% 1287
chr5 2372615 1.31% 1567
chr6 2759360 1.62% 1837
chr7 2278027 1.43% 1597
chr8 1853887 1.28% 1234
chr9 1931508 1.40% 1358
chr10 2038737 1.52% 1420
chr11 2460067 1.82% 1615
chr12 2388677 1.79% 1538
chr13 1122939 0.98% 784
chr14 1494305 1.40% 973
chr15 1429004 1.40% 970
chr16 1721113 1.91% 1192
chr17 2466893 2.96% 1646
chr18 924288 1.15% 622
chr19 2636124 4.50% 1813
chr20 1151886 1.79% 801
chr21 460231 0.99% 341
chr22 953114 1.88% 644
chrX 1285538 0.82% 906
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31194 205 22727 1485.89 1159
global segment-length histogram

Files

Filename Size md5
ENCFF775DIQ.bed.gz 768.4 KB bc64b992a77cb43864b707d403af330c
ENCFF775DIQ.tabix.bed.gz 347.88 KB 3acf1f1669f53f2d65b50f4a90291975
ENCFF775DIQ.tabix.bed.gz.tbi 184.46 KB 7245fc5c27aaaf9b968f8826c62490de
genomic_resource.yaml 1.77 KB d9fab77b4eeb988def31f927181f6b1b
statistics/