Resource
| Id | Histone_ChIP-seq/ENCSR925WMT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR925WMT [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN650GCI|/analyses/ENCAN650GCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF995MSM|/files/ENCFF995MSM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26093733 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR925WMT | float |
Histone_ChIP-seq_ENCSR925WMT |
Histone_ChIP-seq ENCSR925WMT [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K36me3"]
|
 |
[1.71, 21.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52419690 | 1.63% | 103865 |
| chr1 | 5401269 | 2.17% | 10214 |
| chr2 | 3733866 | 1.54% | 7486 |
| chr3 | 2967412 | 1.50% | 6099 |
| chr4 | 1518224 | 0.80% | 3359 |
| chr5 | 2082221 | 1.15% | 4504 |
| chr6 | 2074421 | 1.21% | 4364 |
| chr7 | 2181167 | 1.37% | 4625 |
| chr8 | 1538206 | 1.06% | 3306 |
| chr9 | 2434371 | 1.76% | 4732 |
| chr9_KI270718v1_random | 259 | 0.68% | 1 |
| chr10 | 2304518 | 1.72% | 4778 |
| chr11 | 2782427 | 2.06% | 5306 |
| chr12 | 2945003 | 2.21% | 5640 |
| chr13 | 791991 | 0.69% | 1878 |
| chr14 | 1658224 | 1.55% | 3421 |
| chr14_KI270722v1_random | 201 | 0.10% | 1 |
| chr15 | 1766293 | 1.73% | 3656 |
| chr16 | 2845982 | 3.15% | 5323 |
| chr17 | 3462523 | 4.16% | 6390 |
| chr18 | 729692 | 0.91% | 1670 |
| chr19 | 4192763 | 7.15% | 7308 |
| chr20 | 1757967 | 2.73% | 3419 |
| chr21 | 671404 | 1.44% | 1318 |
| chr22 | 1947009 | 3.83% | 3441 |
| chrUn_GL000219v1 | 205 | 0.11% | 1 |
| chrUn_KI270442v1 | 465 | 0.12% | 1 |
| chrUn_KI270744v1 | 166 | 0.10% | 1 |
| chrX | 611862 | 0.39% | 1575 |
| chrY | 19579 | 0.03% | 48 |
| 3337 contigs with no values (128105250 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103865 | 155 | 16369 | 504.69 | 362 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF172DTZ.bed.gz | 1.91 MB | 5356d87e097f0dcf7d694fd8e8b87d14 |
| ENCFF172DTZ.tabix.bed.gz | 973.58 KB | b3e217f0c787d9b24b60b269c4111b25 |
| ENCFF172DTZ.tabix.bed.gz.tbi | 178.64 KB | 92ec6af196643adae947289a7e9dee0f |
| genomic_resource.yaml | 2.03 KB | 47febbf7283cd3bee0b0718015dd4b34 |
| statistics/ |