Resource

Id Histone_ChIP-seq/ENCSR922OXXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR922OXX [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR922OXX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (37 years)
  • date_created: 2016-03-19T00:39:23.498460+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR922OXX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment: As of January 24, 2017, the lab has submitted new control fastqs, prompting new peak and signal calls for its downstream experiments.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR922OXX float

Histone_ChIP-seq_ENCSR922OXX
Histone_ChIP-seq ENCSR922OXX [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR922OXX [1.32, 5.92]
n
2,441,810
mean
2.85
sd
0.585

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 24418100.08% 4434
chr1 99349 0.04% 223
chr2 98995 0.04% 212
chr2_KI270716v1_random 409 0.27% 1
chr3 78997 0.04% 167
chr4 108728 0.06% 196
chr4_GL000008v2_random 3142 1.50% 5
chr5 140158 0.08% 277
chr6 58377 0.03% 141
chr7 117520 0.07% 231
chr8 60005 0.04% 123
chr9 99808 0.07% 175
chr9_KI270719v1_random 531 0.30% 1
chr10 87514 0.07% 180
chr11 47479 0.04% 118
chr12 155689 0.12% 276
chr13 18977 0.02% 44
chr14 33439 0.03% 83
chr14_GL000225v1_random 1747 0.83% 5
chr15 55894 0.05% 90
chr16 92492 0.10% 162
chr17 36937 0.04% 73
chr17_GL000205v2_random 1095 0.59% 3
chr17_KI270729v1_random 8382 2.98% 19
chr17_KI270730v1_random 1579 1.40% 4
chr18 26337 0.03% 56
chr19 876140 1.49% 1260
chr20 35081 0.05% 84
chr21 37224 0.08% 84
chr22 18698 0.04% 51
chr22_KI270732v1_random 530 1.28% 1
chr22_KI270733v1_random 540 0.30% 2
chr22_KI270735v1_random 953 2.23% 2
chr22_KI270736v1_random 3316 1.82% 7
chr22_KI270738v1_random 230 0.23% 1
chrUn_GL000216v2 727 0.41% 2
chrUn_GL000219v1 3611 2.02% 8
chrUn_GL000224v1 3545 1.97% 5
chrUn_KI270438v1 3183 2.83% 5
chrUn_KI270442v1 8520 2.17% 20
chrUn_KI270589v1 609 1.37% 2
chrUn_KI270591v1 686 11.84% 1
chrUn_KI270747v1 663 0.33% 1
chrUn_KI270749v1 335 0.21% 1
chrUn_KI270751v1 950 0.63% 1
chrUn_KI270756v1 798 1.00% 2
chrUn_KI270757v1 270 0.38% 1
chrX 4547 <0.01% 13
chrY 7074 0.01% 15
3318 contigs with no values (125451745 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4434 225 8152 550.7 403
global segment-length histogram

Files

Filename Size md5
ENCFF328CAW.bed.gz 88.3 KB 99ac2ce4e7770c20c3ec4ea2dfbdb880
ENCFF328CAW.tabix.bed.gz 47.15 KB a0a07bac2444a65780964da9a4871acc
ENCFF328CAW.tabix.bed.gz.tbi 30.0 KB e3d227fa74717d924d6c74d8ae18179e
genomic_resource.yaml 1.66 KB 56011f0cf5a04f75827edf7ddaccb43e
statistics/