| Id: | Histone_ChIP-seq/ENCSR922JMI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR922JMI [biosamplesummary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (25 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN649QGM|/analyses/ENCAN649QGM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF934ZJQ|/files/ENCFF934ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF934ZJQ|/files/ENCFF934ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.26. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR922JMI | float |
Histone_ChIP-seq_ENCSR922JMI |
Histone_ChIP-seq ENCSR922JMI [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K9ac"]
|
 |
[1.86, 62.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF171IVU.bed.gz | 1.12 MB | 2ab62f65d644eb1d6867760f3997d786 |
| ENCFF171IVU.bed.gz.dvc | 101.0 B | 090577cfe158808dfda3335f2e7622a6 |
| ENCFF171IVU.tabix.bed.gz | 537.72 KB | 3a424150a185910b804ad24767827bc2 |
| ENCFF171IVU.tabix.bed.gz.dvc | 106.0 B | cb04c3db7531145248dbeb5a52dd3048 |
| ENCFF171IVU.tabix.bed.gz.tbi | 200.33 KB | 71ddda64b04625b9b318b948f6c98b63 |
| ENCFF171IVU.tabix.bed.gz.tbi.dvc | 110.0 B | 943ebe021b6ebd96a75c9d6f2a2907db |
| genomic_resource.yaml | 2.94 KB | 4a814e34707365c45a7a6ee2bec6e08a |
| genomic_resource_original.yaml | 2.76 KB | 1eba9de6482833f129e7dfd7bda87cc7 |
| statistics/ |