Resource
| Id | Histone_ChIP-seq/ENCSR919ZDE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR919ZDE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN971EGB|/analyses/ENCAN971EGB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF060IGY|/files/ENCFF060IGY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 42497270 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR919ZDE | float |
Histone_ChIP-seq_ENCSR919ZDE |
Histone_ChIP-seq ENCSR919ZDE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27me3"]
|
 |
[1.72, 11.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25001010 | 0.78% | 31719 |
| chr1 | 976706 | 0.39% | 1068 |
| chr2 | 1024879 | 0.42% | 994 |
| chr3 | 373261 | 0.19% | 398 |
| chr4 | 636123 | 0.33% | 568 |
| chr5 | 799835 | 0.44% | 756 |
| chr6 | 1113340 | 0.65% | 1020 |
| chr7 | 824698 | 0.52% | 690 |
| chr8 | 562716 | 0.39% | 635 |
| chr9 | 457704 | 0.33% | 444 |
| chr10 | 810461 | 0.61% | 820 |
| chr11 | 442461 | 0.33% | 473 |
| chr12 | 664778 | 0.50% | 645 |
| chr13 | 350237 | 0.31% | 356 |
| chr14 | 727275 | 0.68% | 808 |
| chr15 | 551903 | 0.54% | 617 |
| chr16 | 534513 | 0.59% | 652 |
| chr17 | 874779 | 1.05% | 833 |
| chr18 | 264915 | 0.33% | 324 |
| chr19 | 600213 | 1.02% | 745 |
| chr20 | 477926 | 0.74% | 559 |
| chr21 | 307401 | 0.66% | 352 |
| chr22 | 188634 | 0.37% | 274 |
| chrX | 11436008 | 7.33% | 17687 |
| chrY | 244 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31719 | 200 | 27819 | 788.2 | 567 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF795SLA.bed.gz | 562.44 KB | d6377ad2bb5f707c1fbe81d417631517 |
| ENCFF795SLA.tabix.bed.gz | 300.89 KB | e9de3495fcdf0e394e52d4f2a55b7ab1 |
| ENCFF795SLA.tabix.bed.gz.tbi | 101.45 KB | ec2fb092a7271e5ca6e55caac9fc4ff3 |
| genomic_resource.yaml | 2.19 KB | 61064e2c8e1f8490f0f8519a8a3c2ea4 |
| statistics/ |