Histone_ChIP-seq_ENCSR916MHZ
Histone_ChIP-seq ENCSR916MHZ [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR916MHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR916MHZ [biosamplesummary="Homo sapiens iPS DF 6.9" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN809BCJ|/analyses/ENCAN809BCJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN809BCJ|/analyses/ENCAN809BCJ/} has in progress subobject document {8267c0bf-ace0-4b26-bd08-24b558af94d3|/documents/8267c0bf-ace0-4b26-bd08-24b558af94d3/} audit_not_compliant: Processed alignments file {ENCFF969MNW|/files/ENCFF969MNW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28666268 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF101RJJ|/files/ENCFF101RJJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20750818 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF969MNW|/files/ENCFF969MNW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF969MNW|/files/ENCFF969MNW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR916MHZ | float |
Histone_ChIP-seq_ENCSR916MHZ |
Histone_ChIP-seq ENCSR916MHZ [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K27me3"]
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[1.64, 24.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292KOH.bed.gz | 530.53 KB | bde0fed780f2fc17cf96dd9b7e2373b3 |
| ENCFF292KOH.bed.gz.dvc | 100.0 B | eb36886ae8835aa408055bc2ef220aaa |
| ENCFF292KOH.tabix.bed.gz | 243.3 KB | 0b760c4f45f291eeafe3792931fafd02 |
| ENCFF292KOH.tabix.bed.gz.dvc | 106.0 B | 4e10d93d34f54442bb4936cf1657e214 |
| ENCFF292KOH.tabix.bed.gz.tbi | 74.36 KB | a6bdcda563e810032259711938a74f50 |
| ENCFF292KOH.tabix.bed.gz.tbi.dvc | 109.0 B | 28fd091913864fb09dbc27cc6c41f091 |
| genomic_resource.yaml | 3.94 KB | a880538bfd0da09b51b31c64f5e80a38 |
| genomic_resource_original.yaml | 3.83 KB | c7d85ee0f7a205d6bb3163118c75a5af |
| statistics/ |