Histone_ChIP-seq_ENCSR915QOL
Histone_ChIP-seq ENCSR915QOL [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR915QOL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR915QOL [biosamplesummary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (11 years) male adult (45 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN061DJJ|/analyses/ENCAN061DJJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN061DJJ|/analyses/ENCAN061DJJ/} has in progress subobject document {1010dfb5-905f-4eb0-abe7-8569a255d5da|/documents/1010dfb5-905f-4eb0-abe7-8569a255d5da/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF627LYN|/files/ENCFF627LYN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF627LYN|/files/ENCFF627LYN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR915QOL | float |
Histone_ChIP-seq_ENCSR915QOL |
Histone_ChIP-seq ENCSR915QOL [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me3"]
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[1.8, 23.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861IJO.bed.gz | 661.67 KB | 577d046f97e786c52c30fec9d32ef417 |
| ENCFF861IJO.bed.gz.dvc | 100.0 B | 1fdcce70c91ba2f4f2afda717ccd5980 |
| ENCFF861IJO.tabix.bed.gz | 311.22 KB | 9713fc311c28af02e0dfb74198e3bc3b |
| ENCFF861IJO.tabix.bed.gz.dvc | 106.0 B | 4b91e629b68cd33f02af99115af2d8d6 |
| ENCFF861IJO.tabix.bed.gz.tbi | 149.39 KB | 6c1734cbf3b8226b2fdc2eed93ef67f4 |
| ENCFF861IJO.tabix.bed.gz.tbi.dvc | 110.0 B | a765e0d5fb95b0554b5212e2f692e99d |
| genomic_resource.yaml | 3.18 KB | 713a986c54736ff345866abe6216e3c7 |
| genomic_resource_original.yaml | 3.02 KB | cba20ea236e6180652a01895e9f7bf01 |
| statistics/ |