Resource
| Id | Histone_ChIP-seq/ENCSR914ETY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR914ETY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN278DGY|/analyses/ENCAN278DGY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF616JHA|/files/ENCFF616JHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 28150154 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR914ETY | float |
Histone_ChIP-seq_ENCSR914ETY |
Histone_ChIP-seq ENCSR914ETY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
|
 |
[1.94, 14.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28507897 | 0.89% | 39383 |
| chr1 | 1428079 | 0.57% | 1797 |
| chr2 | 1263678 | 0.52% | 1407 |
| chr3 | 505643 | 0.25% | 630 |
| chr4 | 752556 | 0.40% | 778 |
| chr5 | 1012771 | 0.56% | 1108 |
| chr6 | 1297692 | 0.76% | 1352 |
| chr7 | 1020437 | 0.64% | 1070 |
| chr8 | 717442 | 0.49% | 905 |
| chr9 | 610164 | 0.44% | 702 |
| chr10 | 1137586 | 0.85% | 1386 |
| chr11 | 647274 | 0.48% | 789 |
| chr12 | 878261 | 0.66% | 971 |
| chr13 | 425108 | 0.37% | 502 |
| chr14 | 865381 | 0.81% | 1106 |
| chr15 | 669111 | 0.66% | 905 |
| chr16 | 837408 | 0.93% | 1123 |
| chr17 | 1147715 | 1.38% | 1216 |
| chr18 | 356089 | 0.44% | 469 |
| chr19 | 869365 | 1.48% | 1124 |
| chr20 | 723154 | 1.12% | 930 |
| chr21 | 360888 | 0.77% | 504 |
| chr22 | 338446 | 0.67% | 519 |
| chrX | 10643399 | 6.82% | 18089 |
| chrY | 250 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39383 | 175 | 25073 | 723.86 | 514 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF537QJH.bed.gz | 697.2 KB | c4f2ce7c54090388faf0e1b0a3312b9d |
| ENCFF537QJH.tabix.bed.gz | 370.75 KB | 961727e21489112f5a70bd4f5657901b |
| ENCFF537QJH.tabix.bed.gz.tbi | 126.08 KB | 8e0cc83f5af5af20d3174e7fb71d0339 |
| genomic_resource.yaml | 2.24 KB | c38cfa824ff308fa03bb9b5773d80ed8 |
| statistics/ |