Histone_ChIP-seq_ENCSR914AWT
Histone_ChIP-seq ENCSR914AWT [biosample_summary="Homo sapiens GM23248" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR914AWT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR914AWT [biosamplesummary="Homo sapiens GM23248" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473MIF|/analyses/ENCAN473MIF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN473MIF|/analyses/ENCAN473MIF/} has in progress subobject document {cc0c3195-8231-462e-aca9-61724b057477|/documents/cc0c3195-8231-462e-aca9-61724b057477/} audit_warning: Processed alignments file {ENCFF988CRX|/files/ENCFF988CRX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 37712869 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF765QXR|/files/ENCFF765QXR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36587141 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF988CRX|/files/ENCFF988CRX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF988CRX|/files/ENCFF988CRX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF765QXR|/files/ENCFF765QXR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF765QXR|/files/ENCFF765QXR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR914AWT | float |
Histone_ChIP-seq_ENCSR914AWT |
Histone_ChIP-seq ENCSR914AWT [biosample_summary="Homo sapiens GM23248" and target="H3K36me3"]
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[1.6, 9.52] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF922AFS.bed.gz | 1.88 MB | 162024dcdde3f57b9bdaabf4b59dbd26 |
| ENCFF922AFS.bed.gz.dvc | 101.0 B | 50308015781b0fc9481b6f79877ea8e2 |
| ENCFF922AFS.tabix.bed.gz | 875.89 KB | 2daf124e51ae486400c4d5418d41868d |
| ENCFF922AFS.tabix.bed.gz.dvc | 106.0 B | 294e9fd85ee6dc72309a9528327e1db1 |
| ENCFF922AFS.tabix.bed.gz.tbi | 147.61 KB | ee3645c07c347bdb1a7eabff114481c7 |
| ENCFF922AFS.tabix.bed.gz.tbi.dvc | 110.0 B | c6034b878084c0b584833378e4587ea0 |
| genomic_resource.yaml | 5.23 KB | 0ce7428b5e16d6cf85bdc2bb0caa64f4 |
| genomic_resource_original.yaml | 5.12 KB | b134ba84ad283a84b9a5535a70cd25f5 |
| statistics/ |