Resource

Id Histone_ChIP-seq/ENCSR912IDHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR912IDH [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR912IDH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (26 years)
  • date_created: 2015-09-15T20:26:21.262436+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR912IDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR912IDH float

Histone_ChIP-seq_ENCSR912IDH
Histone_ChIP-seq ENCSR912IDH [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR912IDH [1.41, 59]
n
84,287,200
mean
5.5
sd
1.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 842872002.62% 125256
chr1 8571152 3.44% 12299
chr1_KI270712v1_random 899 0.51% 2
chr1_KI270713v1_random 775 1.90% 2
chr2 6820752 2.82% 10284
chr3 5354837 2.70% 8248
chr4 3154711 1.66% 5186
chr5 4563926 2.51% 7016
chr6 4394107 2.57% 7112
chr7 3927393 2.46% 6050
chr8 3712182 2.56% 5770
chr9 3984350 2.88% 5781
chr10 4278391 3.20% 6408
chr11 5022489 3.72% 6991
chr12 4176152 3.13% 6278
chr13 1818380 1.59% 3009
chr14 2703215 2.53% 4039
chr15 3136757 3.08% 4630
chr16 3096910 3.43% 4324
chr17 4563247 5.48% 6033
chr17_GL000205v2_random 1622 0.87% 1
chr18 1623967 2.02% 2600
chr19 3470203 5.92% 4377
chr20 2375401 3.69% 3486
chr21 874658 1.87% 1376
chr22 1993174 3.92% 2682
chrUn_GL000195v1 516 0.28% 1
chrUn_GL000219v1 470 0.26% 1
chrX 666564 0.43% 1270
3338 contigs with no values (185540027 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125256 160 13990 672.92 543
global segment-length histogram

Files

Filename Size md5
ENCFF492DBN.bed.gz 2.5 MB 518ed787474b33711c821ab7968728f7
ENCFF492DBN.tabix.bed.gz 1.22 MB 574ca95fd5b2dd86eecc160740be5522
ENCFF492DBN.tabix.bed.gz.tbi 375.47 KB be32675a4e94165b61a22358fcc4a923
genomic_resource.yaml 2.01 KB 1a95246e8f58793243be8ee03317fcca
statistics/