Resource
| Id | Histone_ChIP-seq/ENCSR911WPA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR911WPA [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (20 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN777JKN|/analyses/ENCAN777JKN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF024TIJ|/files/ENCFF024TIJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 14124126 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR911WPA | float |
Histone_ChIP-seq_ENCSR911WPA |
Histone_ChIP-seq ENCSR911WPA [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K27me3"]
|
 |
[2.06, 51] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58771148 | 1.83% | 74029 |
| chr1 | 5771777 | 2.32% | 7689 |
| chr2 | 3724328 | 1.54% | 4591 |
| chr3 | 2336695 | 1.18% | 3255 |
| chr4 | 1956302 | 1.03% | 2122 |
| chr5 | 3227160 | 1.78% | 3794 |
| chr6 | 3136159 | 1.84% | 3629 |
| chr7 | 2774027 | 1.74% | 3394 |
| chr8 | 1993591 | 1.37% | 2551 |
| chr9 | 2758304 | 1.99% | 3478 |
| chr10 | 3629504 | 2.71% | 4386 |
| chr11 | 3122619 | 2.31% | 4027 |
| chr12 | 2867085 | 2.15% | 3669 |
| chr13 | 964238 | 0.84% | 1227 |
| chr14 | 1788233 | 1.67% | 2191 |
| chr15 | 1683323 | 1.65% | 2244 |
| chr16 | 2894380 | 3.20% | 3912 |
| chr17 | 4361105 | 5.24% | 5065 |
| chr18 | 896209 | 1.12% | 1109 |
| chr19 | 3981744 | 6.79% | 4871 |
| chr20 | 2402833 | 3.73% | 3304 |
| chr21 | 531214 | 1.14% | 718 |
| chr22 | 1358900 | 2.67% | 1978 |
| chrX | 603998 | 0.39% | 811 |
| chrY | 7420 | 0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 74029 | 155 | 129224 | 793.89 | 427 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF473QVC.bed.gz | 1.25 MB | ab434cf9e534ca66a550b52101491b2d |
| ENCFF473QVC.tabix.bed.gz | 663.49 KB | 4c648be10ddfb6f824c5cc4698a3b66f |
| ENCFF473QVC.tabix.bed.gz.tbi | 215.26 KB | 6e527832d8ee8b1c77a303c683a28c2c |
| genomic_resource.yaml | 2.02 KB | 8a621758268a35c70c3671ad6271acfd |
| statistics/ |