Resource

Id Histone_ChIP-seq/ENCSR910XKXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR910XKX [biosample_summary="Homo sapiens Karpas-422" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR910XKX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005719/
  • biosample_summary: Homo sapiens Karpas-422
  • date_created: 2014-02-20T05:23:39.316518+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR910XKX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR910XKX float

Histone_ChIP-seq_ENCSR910XKX
Histone_ChIP-seq ENCSR910XKX [biosample_summary="Homo sapiens Karpas-422" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR910XKX [1.42, 45.5]
n
52,489,057
mean
15.9
sd
9.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 524890571.63% 36730
chr1 4970871 2.00% 3401
chr1_KI270713v1_random 1405 3.45% 3
chr2 3954099 1.63% 2834
chr3 3415987 1.72% 2397
chr4 2041124 1.07% 1494
chr4_GL000008v2_random 1858 0.89% 2
chr5 2483437 1.37% 1634
chr6 3070210 1.80% 2003
chr7 2433010 1.53% 1749
chr8 2157468 1.49% 1499
chr9 2005343 1.45% 1374
chr10 2189667 1.64% 1555
chr11 2762291 2.04% 1893
chr12 2727902 2.05% 1890
chr13 1238784 1.08% 977
chr14 2104037 1.97% 1486
chr14_GL000194v1_random 316 0.17% 1
chr15 1700935 1.67% 1135
chr16 2003086 2.22% 1421
chr17 2691666 3.23% 1825
chr17_GL000205v2_random 3655 1.97% 5
chr17_KI270729v1_random 1613 0.57% 4
chr17_KI270730v1_random 431 0.38% 1
chr18 1047500 1.30% 772
chr19 2817010 4.81% 1952
chr20 1398231 2.17% 1034
chr21 491887 1.05% 377
chr22 1274363 2.51% 864
chr22_KI270735v1_random 876 2.05% 2
chr22_KI270736v1_random 3160 1.74% 4
chrUn_GL000216v2 2530 1.43% 4
chrUn_GL000219v1 6380 3.56% 4
chrUn_GL000224v1 564 0.31% 1
chrUn_KI270438v1 850 0.76% 2
chrUn_KI270442v1 4338 1.11% 8
chrUn_KI270589v1 579 1.30% 1
chrUn_KI270756v1 363 0.46% 1
chrUn_KI270757v1 654 0.92% 2
chrX 1479909 0.95% 1117
chrY 668 <0.01% 2
3326 contigs with no values (126596070 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36730 220 12779 1429.05 994
global segment-length histogram

Files

Filename Size md5
ENCFF656PHI.bed.gz 1.0 MB a7c4e63ee87c120a7e09ebef5dca407b
ENCFF656PHI.tabix.bed.gz 424.55 KB 623c0f4a2ead43ac9e37302864684223
ENCFF656PHI.tabix.bed.gz.tbi 170.72 KB 36e62b43306f5fd4e5e1162b1b4225ff
genomic_resource.yaml 2.04 KB 3a6630467d35c6479e20924cfd875727
statistics/