Histone_ChIP-seq_ENCSR910PDW
Histone_ChIP-seq ENCSR910PDW [biosample_summary="Homo sapiens epithelial cell of prostate male" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR910PDW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR910PDW [biosamplesummary="Homo sapiens epithelial cell of prostate male" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN208PHQ|/analyses/ENCAN208PHQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF175ANQ|/files/ENCFF175ANQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF175ANQ|/files/ENCFF175ANQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR910PDW | float |
Histone_ChIP-seq_ENCSR910PDW |
Histone_ChIP-seq ENCSR910PDW [biosample_summary="Homo sapiens epithelial cell of prostate male" and target="H3K27ac"]
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[1.45, 323] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF655JIF.bed.gz | 1.96 MB | 0de08a4df96e879b2ded73f4bd78be25 |
| ENCFF655JIF.bed.gz.dvc | 101.0 B | 465136105efe5244ced6fae8633708fa |
| ENCFF655JIF.tabix.bed.gz | 830.43 KB | 83ce0759d4af62037fb2da8571c3bf8c |
| ENCFF655JIF.tabix.bed.gz.dvc | 106.0 B | 233e70870ef756e2eee675a7712d8478 |
| ENCFF655JIF.tabix.bed.gz.tbi | 292.99 KB | b8b0ee433ff89205b39109a343e024b6 |
| ENCFF655JIF.tabix.bed.gz.tbi.dvc | 110.0 B | eb6fbc6cdc304601b237ff80a1d282f4 |
| genomic_resource.yaml | 2.69 KB | f3e30ad1e1277298bb0ce98e9ca66019 |
| genomic_resource_original.yaml | 2.56 KB | b7265d1ad7b292c9d98ea67cdd265d53 |
| statistics/ |