Resource

Id Histone_ChIP-seq/ENCSR907JPVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR907JPV [biosample_summary="Homo sapiens spleen tissue male adult (26 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR907JPV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male adult (26 years)
  • date_created: 2020-05-01T03:07:46.243415+00:00
  • date_released: 2020-09-03
  • doi: 10.17989/ENCSR907JPV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR907JPV float

Histone_ChIP-seq_ENCSR907JPV
Histone_ChIP-seq ENCSR907JPV [biosample_summary="Homo sapiens spleen tissue male adult (26 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR907JPV [1.83, 47.2]
n
32,492,692
mean
16.6
sd
8.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 324926921.01% 21495
chr1 3238555 1.30% 2143
chr2 2217360 0.92% 1437
chr3 1780721 0.90% 1159
chr4 1243111 0.65% 783
chr5 1564421 0.86% 973
chr6 1877366 1.10% 1197
chr7 1583605 0.99% 1074
chr8 1174637 0.81% 769
chr9 1352826 0.98% 922
chr10 1380219 1.03% 903
chr11 1824470 1.35% 1139
chr12 1696989 1.27% 1072
chr13 641346 0.56% 426
chr14 1092714 1.02% 708
chr15 1055265 1.03% 705
chr16 1300541 1.44% 873
chr17 1976147 2.37% 1290
chr18 520993 0.65% 354
chr19 2198107 3.75% 1572
chr20 857182 1.33% 583
chr21 314887 0.67% 215
chr22 751546 1.48% 520
chrX 818767 0.52% 660
chrY 30917 0.05% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21495 205 9583 1511.64 1371
global segment-length histogram

Files

Filename Size md5
ENCFF405EOJ.bed.gz 514.12 KB a836a5bb065bbd02461d12371d5a7e30
ENCFF405EOJ.tabix.bed.gz 238.94 KB 973ae3bbf2f429025e3185bc2b8fe0d2
ENCFF405EOJ.tabix.bed.gz.tbi 140.22 KB c10b1bb9e8bf04902017aacfa817e093
genomic_resource.yaml 1.7 KB 3fc5473b9858bca2be91f033d8fe8920
statistics/