Resource

Id Histone_ChIP-seq/ENCSR906YEScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR906YES [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR906YES
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue male adult (37 years)
  • date_created: 2016-03-19T00:38:07.291804+00:00
  • date_released: 2016-05-23
  • doi: 10.17989/ENCSR906YES
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR906YES float

Histone_ChIP-seq_ENCSR906YES
Histone_ChIP-seq ENCSR906YES [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR906YES [1.68, 5.18]
n
5,580,341
mean
2.86
sd
0.475

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55803410.17% 12005
chr1 594246 0.24% 1248
chr2 393034 0.16% 836
chr3 302442 0.15% 678
chr4 151717 0.08% 356
chr5 232618 0.13% 517
chr6 235721 0.14% 540
chr7 218860 0.14% 501
chr8 200768 0.14% 433
chr9 260839 0.19% 578
chr10 309553 0.23% 655
chr11 361950 0.27% 753
chr12 254738 0.19% 542
chr13 77063 0.07% 187
chr14 227422 0.21% 481
chr15 213279 0.21% 462
chr16 261993 0.29% 546
chr17 419644 0.50% 885
chr18 92138 0.11% 213
chr19 296805 0.51% 618
chr20 196861 0.31% 406
chr21 56795 0.12% 124
chr22 218341 0.43% 437
chrX 3514 <0.01% 9
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12005 250 3474 464.83 403
global segment-length histogram

Files

Filename Size md5
ENCFF749ZAL.bed.gz 233.69 KB 3546e3eff3c728728b2325c9717d7805
ENCFF749ZAL.tabix.bed.gz 125.89 KB 0f0370b988e1dbab6ffd4ff402b92332
ENCFF749ZAL.tabix.bed.gz.tbi 78.09 KB 0acdf8d6a99cd462d2e99f4f971d88f5
genomic_resource.yaml 1.98 KB ea7b16e1a51e544825646932ec1baf68
statistics/