type: position_score
table:
  filename: ENCFF455SGI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR905SHH
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR905SHH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K9me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR905SHH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K9me3"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: replicated peaks\n\n**audit\\_internal\\\
    _action**: Archived analysis {ENCAN607FPP|/analyses/ENCAN607FPP/} has in progress\
    \ subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed redacted unfiltered alignments file {ENCFF575CEK|/files/ENCFF575CEK/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 20764619 mapped reads. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human\
    \ and investigated as a broad histone mark is 35 million mapped reads. The recommended\
    \ value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/})\n\n**audit\\_warning**: Processed\
    \ redacted unfiltered alignments file {ENCFF450STF|/files/ENCFF450STF/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline has 37977489 mapped reads. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human\
    \ and investigated as a broad histone mark is 35 million mapped reads. The recommended\
    \ value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR905SHH
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000625/
    perturbed: false
    doi: 10.17989/ENCSR905SHH
    date_created: '2015-09-15T19:48:45.984663+00:00'
    date_released: '2013-07-31'
    submitter_comment: Experiment 8b848700-6360-4c2d-b36c-d210558e363a merged into
      base.
    target: H3K9me3
