Resource

Id Histone_ChIP-seq/ENCSR904KDPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR904KDP [biosample_summary="Homo sapiens left lung tissue female child (16 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR904KDP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue female child (16 years)
  • date_created: 2021-01-28T22:01:58.261142+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR904KDP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR904KDP float

Histone_ChIP-seq_ENCSR904KDP
Histone_ChIP-seq ENCSR904KDP [biosample_summary="Homo sapiens left lung tissue female child (16 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR904KDP [1.9, 32.6]
n
30,358,638
mean
13.4
sd
5.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 303586380.94% 21298
chr1 3012939 1.21% 2149
chr2 2076484 0.86% 1421
chr3 1761741 0.89% 1164
chr4 1209141 0.64% 791
chr5 1454855 0.80% 906
chr6 1806561 1.06% 1201
chr7 1474137 0.93% 1070
chr8 1118595 0.77% 761
chr9 1237286 0.89% 909
chr10 1276137 0.95% 873
chr11 1642825 1.22% 1128
chr12 1604585 1.20% 1073
chr13 618627 0.54% 419
chr14 1008604 0.94% 706
chr15 994086 0.97% 704
chr16 1212371 1.34% 861
chr17 1800703 2.16% 1278
chr18 519423 0.65% 358
chr19 1942430 3.31% 1533
chr20 775348 1.20% 562
chr21 296387 0.63% 218
chr22 660197 1.30% 506
chrX 855176 0.55% 707
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21298 225 9588 1425.42 1274
global segment-length histogram

Files

Filename Size md5
ENCFF582PNL.bed.gz 533.17 KB 441bf8923dbea52b7bb9199dba5e88ee
ENCFF582PNL.tabix.bed.gz 241.68 KB 919ced58ef5b78a0e08c0e08e0e7ff8f
ENCFF582PNL.tabix.bed.gz.tbi 137.25 KB 8232005ad4779af73a50814fe5324793
genomic_resource.yaml 1.5 KB e1e067c72ea4d5d04de1176ae251e904
statistics/