Resource

Id Histone_ChIP-seq/ENCSR902QIJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR902QIJ [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR902QIJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (26 years)
  • date_created: 2015-09-15T20:26:21.418445+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR902QIJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR902QIJ float

Histone_ChIP-seq_ENCSR902QIJ
Histone_ChIP-seq ENCSR902QIJ [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR902QIJ [2.22, 45.5]
n
27,874,839
mean
17.5
sd
8.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278748390.87% 21799
chr1 2746228 1.10% 2160
chr2 1915155 0.79% 1489
chr3 1578699 0.80% 1191
chr4 1093652 0.57% 823
chr5 1357194 0.75% 995
chr6 1612835 0.94% 1248
chr7 1386998 0.87% 1125
chr8 1049506 0.72% 821
chr9 1134763 0.82% 907
chr10 1180321 0.88% 888
chr11 1542672 1.14% 1138
chr12 1518798 1.14% 1151
chr13 553647 0.48% 419
chr14 892967 0.83% 701
chr15 918306 0.90% 709
chr16 1116484 1.24% 889
chr17 1645692 1.98% 1274
chr18 455904 0.57% 378
chr19 1871590 3.19% 1531
chr20 686169 1.06% 538
chr21 252495 0.54% 203
chr22 613472 1.21% 516
chrX 751292 0.48% 705
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21799 195 10468 1278.72 1092
global segment-length histogram

Files

Filename Size md5
ENCFF239ZNV.bed.gz 554.86 KB c3ab9968068e5a67d98db5ba0826f68d
ENCFF239ZNV.tabix.bed.gz 246.95 KB 4bfc3639ce49563ba306be9606aae1cf
ENCFF239ZNV.tabix.bed.gz.tbi 136.73 KB 8fb4c27626efd51e5bae23ecab1d8db4
genomic_resource.yaml 2.01 KB 734e2174e0321039081ded14698d1cf6
statistics/