Histone_ChIP-seq_ENCSR901SIL
Histone_ChIP-seq ENCSR901SIL [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR901SIL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR901SIL [biosamplesummary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN235FIY|/analyses/ENCAN235FIY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF813MFQ|/files/ENCFF813MFQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF813MFQ|/files/ENCFF813MFQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR901SIL | float |
Histone_ChIP-seq_ENCSR901SIL |
Histone_ChIP-seq ENCSR901SIL [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me3"]
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[1.24, 45.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF086QMV.bed.gz | 760.18 KB | c8fabd18ac54ff5ec872b680240c22fa |
| ENCFF086QMV.bed.gz.dvc | 100.0 B | bd0f5776986e4b2b7f53eca73163697f |
| ENCFF086QMV.tabix.bed.gz | 316.77 KB | c99d7f923b2477d954b29e11d72f4d39 |
| ENCFF086QMV.tabix.bed.gz.dvc | 106.0 B | 25207a16e7900ff7229253697a7f235e |
| ENCFF086QMV.tabix.bed.gz.tbi | 166.48 KB | 009146e86003d4f5323f926f685e8c73 |
| ENCFF086QMV.tabix.bed.gz.tbi.dvc | 110.0 B | 02925466cc95e8a6f47aa9bf3e36331e |
| genomic_resource.yaml | 2.78 KB | 6470fdee8c8864b791577cab677a5a72 |
| genomic_resource_original.yaml | 2.64 KB | 5625aba917e41c2cc7bd57f958749e41 |
| statistics/ |