Resource

Id Histone_ChIP-seq/ENCSR901EDLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR901EDL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR901EDL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)
  • date_created: 2021-01-28T04:10:59.144895+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR901EDL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (89 years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR901EDL float

Histone_ChIP-seq_ENCSR901EDL
Histone_ChIP-seq ENCSR901EDL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR901EDL [1.8, 70.4]
n
69,885,532
mean
23.8
sd
15.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 698855322.17% 42226
chr1 6750052 2.71% 4021
chr2 5122739 2.12% 3174
chr3 4278817 2.16% 2532
chr4 3113734 1.64% 1885
chr5 3643493 2.01% 2174
chr6 4189292 2.45% 2550
chr7 3436531 2.16% 2189
chr8 2807998 1.93% 1706
chr9 3023085 2.18% 1911
chr10 3210433 2.40% 1999
chr11 3645593 2.70% 2116
chr12 3599137 2.70% 2108
chr13 1769781 1.55% 1124
chr14 2282060 2.13% 1342
chr15 2151712 2.11% 1301
chr16 2516117 2.79% 1575
chr17 3611648 4.34% 2091
chr18 1456625 1.81% 921
chr19 3573446 6.10% 2063
chr20 1715339 2.66% 1048
chr21 728848 1.56% 476
chr22 1374199 2.70% 821
chrX 1824079 1.17% 1065
chrY 60774 0.11% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42226 240 37823 1655.04 1134
global segment-length histogram

Files

Filename Size md5
ENCFF954FED.bed.gz 1.04 MB 2358c431e1050225060c2bd8dfe45464
ENCFF954FED.tabix.bed.gz 474.35 KB 64bb3fa4d133f17b46c6be190e05b6fe
ENCFF954FED.tabix.bed.gz.tbi 228.45 KB 323b8335681571794834e88a731eb9b2
genomic_resource.yaml 1.71 KB 21ba9ac2d57c9e2644640951e95b21a7
statistics/