Resource

Id Histone_ChIP-seq/ENCSR900UIPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR900UIP [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR900UIP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue female adult (53 years)
  • date_created: 2017-01-24T04:32:31.480797+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR900UIP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR900UIP float

Histone_ChIP-seq_ENCSR900UIP
Histone_ChIP-seq ENCSR900UIP [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR900UIP [1.73, 47.3]
n
28,544,730
mean
19.6
sd
9.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 285447300.89% 20970
chr1 2857444 1.15% 2095
chr2 1986117 0.82% 1362
chr3 1666732 0.84% 1170
chr4 1219048 0.64% 816
chr5 1352717 0.75% 915
chr6 1635534 0.96% 1131
chr7 1437986 0.90% 1060
chr8 1030496 0.71% 765
chr9 1190790 0.86% 904
chr10 1232535 0.92% 871
chr11 1544949 1.14% 1111
chr12 1518346 1.14% 1053
chr13 562039 0.49% 397
chr14 917124 0.86% 667
chr15 936007 0.92% 711
chr16 1096299 1.21% 866
chr17 1639170 1.97% 1266
chr18 485938 0.60% 377
chr19 1758122 3.00% 1454
chr20 714709 1.11% 552
chr21 265390 0.57% 214
chr22 606526 1.19% 489
chrX 890712 0.57% 724
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20970 190 14286 1361.22 1202
global segment-length histogram

Files

Filename Size md5
ENCFF530UBK.bed.gz 572.52 KB c8f3d00af53e721099ac1e9c9ffb8b84
ENCFF530UBK.tabix.bed.gz 245.71 KB 8979b9dae6df0d7a3cef54b5af0e6cd1
ENCFF530UBK.tabix.bed.gz.tbi 133.81 KB 22e633af4ed4fe1dce01c103fc0b1805
genomic_resource.yaml 1.73 KB 20aaf555a8f9819b0c6ae53883f65630
statistics/