Resource

Id Histone_ChIP-seq/ENCSR900SJWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR900SJW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (46 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR900SJW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue female adult (46 years)
  • date_created: 2020-05-01T02:19:11.029523+00:00
  • date_released: 2020-09-15
  • doi: 10.17989/ENCSR900SJW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR900SJW float

Histone_ChIP-seq_ENCSR900SJW
Histone_ChIP-seq ENCSR900SJW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (46 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR900SJW [1.99, 70.8]
n
42,292,474
mean
26.8
sd
14.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 422924741.31% 25457
chr1 4199019 1.69% 2489
chr2 2857864 1.18% 1697
chr3 2430711 1.23% 1416
chr4 1714063 0.90% 997
chr5 2064388 1.14% 1184
chr6 2447143 1.43% 1423
chr7 2072291 1.30% 1284
chr8 1650186 1.14% 995
chr9 1784554 1.29% 1103
chr10 1863665 1.39% 1135
chr11 2265768 1.68% 1309
chr12 2238730 1.68% 1283
chr13 904929 0.79% 552
chr14 1329981 1.24% 781
chr15 1386008 1.36% 831
chr16 1620497 1.79% 1019
chr17 2434181 2.92% 1479
chr18 733129 0.91% 433
chr19 2646814 4.52% 1712
chr20 1109875 1.72% 696
chr21 387676 0.83% 249
chr22 956590 1.88% 600
chrX 1189335 0.76% 784
chrY 5077 0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25457 235 15664 1661.33 1443
global segment-length histogram

Files

Filename Size md5
ENCFF933VKQ.bed.gz 665.69 KB b2246fbb3a91966798dffc3c5f1f7be6
ENCFF933VKQ.tabix.bed.gz 293.54 KB d7e7f7e669dfef2cc18f097f19a06ebf
ENCFF933VKQ.tabix.bed.gz.tbi 160.08 KB af5a6a64b21d0ed645c5c620b2c603ea
genomic_resource.yaml 1.76 KB 6a88600eedf1cd0088084dd33ec29df0
statistics/