Resource
| Id | Histone_ChIP-seq/ENCSR900AQX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR900AQX [biosample_summary="Homo sapiens GM23248" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN128RDD|/analyses/ENCAN128RDD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF008FMW|/files/ENCFF008FMW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16890749 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF428EOH|/files/ENCFF428EOH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22749895 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR900AQX | float |
Histone_ChIP-seq_ENCSR900AQX |
Histone_ChIP-seq ENCSR900AQX [biosample_summary="Homo sapiens GM23248" and target="H4K20me1"]
|
 |
[1.41, 7.08] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14346282 | 0.45% | 22368 |
| chr1 | 1477133 | 0.59% | 2238 |
| chr2 | 1253420 | 0.52% | 1883 |
| chr3 | 1104407 | 0.56% | 1729 |
| chr4 | 521783 | 0.27% | 870 |
| chr5 | 943186 | 0.52% | 1428 |
| chr6 | 742654 | 0.43% | 1167 |
| chr7 | 690293 | 0.43% | 1117 |
| chr8 | 676978 | 0.47% | 1039 |
| chr9 | 569221 | 0.41% | 895 |
| chr10 | 740191 | 0.55% | 1223 |
| chr11 | 798762 | 0.59% | 1214 |
| chr12 | 633684 | 0.48% | 1006 |
| chr13 | 361760 | 0.32% | 624 |
| chr14 | 544803 | 0.51% | 823 |
| chr15 | 520014 | 0.51% | 859 |
| chr16 | 573719 | 0.64% | 816 |
| chr17 | 730641 | 0.88% | 1057 |
| chr18 | 242741 | 0.30% | 422 |
| chr19 | 316819 | 0.54% | 494 |
| chr20 | 424570 | 0.66% | 656 |
| chr21 | 111388 | 0.24% | 189 |
| chr22 | 299945 | 0.59% | 480 |
| chrX | 60763 | 0.04% | 124 |
| chrY | 7407 | 0.01% | 15 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 22368 | 200 | 8819 | 641.38 | 515 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF767SDO.bed.gz | 498.29 KB | c7b6e9fb348bbc09be8f7103d82467cb |
| ENCFF767SDO.tabix.bed.gz | 236.8 KB | a379da3ee52f9e27b824a15389c4db09 |
| ENCFF767SDO.tabix.bed.gz.tbi | 76.7 KB | 245eb7dc0d28e69b3597209585b88e0f |
| genomic_resource.yaml | 2.37 KB | 40875294d8246df965993d3f1476807b |
| statistics/ |