Resource

Id Histone_ChIP-seq/ENCSR899PMXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR899PMX [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR899PMX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:33.279713+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR899PMX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR899PMX float

Histone_ChIP-seq_ENCSR899PMX
Histone_ChIP-seq ENCSR899PMX [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR899PMX [1.57, 11.7]
n
76,487,213
mean
4.06
sd
1.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 764872132.38% 69952
chr1 2372194 0.95% 2249
chr2 2222691 0.92% 2036
chr3 850365 0.43% 797
chr4 1229383 0.65% 1066
chr5 1587573 0.87% 1333
chr6 2174651 1.27% 1640
chr7 1551740 0.97% 1244
chr8 1233931 0.85% 1188
chr9 961030 0.69% 849
chr10 1871304 1.40% 1811
chr11 1082701 0.80% 1044
chr12 1480002 1.11% 1316
chr13 749387 0.66% 681
chr14 1550186 1.45% 1436
chr15 1225443 1.20% 1276
chr16 1458224 1.61% 1522
chr17 1801773 2.16% 1499
chr18 691642 0.86% 700
chr19 1415078 2.41% 1370
chr20 1261435 1.96% 1282
chr21 664064 1.42% 650
chr22 547327 1.08% 631
chrX 46505089 29.80% 42332
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69952 230 62001 1093.42 788
global segment-length histogram

Files

Filename Size md5
ENCFF698HFB.bed.gz 1.27 MB 1a72ebc18f6693061341ff0a64b34766
ENCFF698HFB.tabix.bed.gz 675.89 KB 82b4a27073247e9cfae5d6310e61be17
ENCFF698HFB.tabix.bed.gz.tbi 134.62 KB 73df13b40edd33b27900d194528acc3b
genomic_resource.yaml 1.75 KB 73eae4ba5e3ffc063cf5d3435aea7ae5
statistics/