Histone_ChIP-seq_ENCSR899MFS
Histone_ChIP-seq ENCSR899MFS [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR899MFS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR899MFS [biosamplesummary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN555VGQ|/analyses/ENCAN555VGQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN555VGQ|/analyses/ENCAN555VGQ/} has in progress subobject document {73dd86b9-f358-4ac2-8519-024ea9a4ca45|/documents/73dd86b9-f358-4ac2-8519-024ea9a4ca45/} audit_not_compliant: Processed alignments file {ENCFF256DTK|/files/ENCFF256DTK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10366297 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF256DTK|/files/ENCFF256DTK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF256DTK|/files/ENCFF256DTK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR899MFS | float |
Histone_ChIP-seq_ENCSR899MFS |
Histone_ChIP-seq ENCSR899MFS [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K36me3"]
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[2.02, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292SFD.bed.gz | 729.36 KB | 22b123cf07df73fff4efc593fdf40bfc |
| ENCFF292SFD.bed.gz.dvc | 100.0 B | 683bdb1e051d33c50e029ed820748440 |
| ENCFF292SFD.tabix.bed.gz | 373.01 KB | f04a5dd66c1f6954ac2aefdc6db8206f |
| ENCFF292SFD.tabix.bed.gz.dvc | 106.0 B | 5237d87812426b06d625d49d0af18bdb |
| ENCFF292SFD.tabix.bed.gz.tbi | 139.83 KB | 76501155caacf8aeb125e5cd5dbdcc0c |
| ENCFF292SFD.tabix.bed.gz.tbi.dvc | 110.0 B | 0a2f204ee35db29bd14fc2de333f1157 |
| genomic_resource.yaml | 3.49 KB | db236d6e2ccd95eee283a6a9b6fc512a |
| genomic_resource_original.yaml | 3.34 KB | 6fee0ca31dcf0e960ff745fb8ac41bd7 |
| statistics/ |