Histone_ChIP-seq_ENCSR899DSF
Histone_ChIP-seq ENCSR899DSF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR899DSF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR899DSF [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN976RXT|/analyses/ENCAN976RXT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF952XYR|/files/ENCFF952XYR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF952XYR|/files/ENCFF952XYR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR899DSF | float |
Histone_ChIP-seq_ENCSR899DSF |
Histone_ChIP-seq ENCSR899DSF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me1"]
|
|
[1.61, 6.52] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF680TQM.bed.gz | 980.9 KB | e74b59ca54b6ab8c34616b3e9788cb7e |
| ENCFF680TQM.bed.gz.dvc | 101.0 B | c7acd0b729d7889700060788b6ce41fe |
| ENCFF680TQM.tabix.bed.gz | 491.71 KB | 208eafba34df79872de1f050ed286f8c |
| ENCFF680TQM.tabix.bed.gz.dvc | 106.0 B | 1f63e96b767aa2bf2abc55f78b2e6266 |
| ENCFF680TQM.tabix.bed.gz.tbi | 179.84 KB | be0b75b0e682a68512da0dd6677ab944 |
| ENCFF680TQM.tabix.bed.gz.tbi.dvc | 110.0 B | 216cba89a497cc7fbbccdebf8bf9f16f |
| genomic_resource.yaml | 2.79 KB | dc871556097dec51bf8b4edea8f201d0 |
| genomic_resource_original.yaml | 2.65 KB | e0bfa7d908d186819c57c66a5fa3afcf |
| statistics/ |