Histone_ChIP-seq_ENCSR892RZN
Histone_ChIP-seq ENCSR892RZN [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR892RZN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR892RZN [biosamplesummary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN723END|/analyses/ENCAN723END/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF144JVO|/files/ENCFF144JVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF144JVO|/files/ENCFF144JVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR892RZN | float |
Histone_ChIP-seq_ENCSR892RZN |
Histone_ChIP-seq ENCSR892RZN [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K9ac"]
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[1.77, 43.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF359DCF.bed.gz | 1.49 MB | b1e730a55ce7ff06c55b6d5e5c36840b |
| ENCFF359DCF.bed.gz.dvc | 101.0 B | 3950654e21f68219f0fc46a205f96d8e |
| ENCFF359DCF.tabix.bed.gz | 722.55 KB | ecaf381e6e1c764047fbdad21b197fd4 |
| ENCFF359DCF.tabix.bed.gz.dvc | 106.0 B | 1ebcb0b2447666d2471c6dd6efceea73 |
| ENCFF359DCF.tabix.bed.gz.tbi | 221.26 KB | d5724ffa80b859fd5dcfce5ccb9d2d3c |
| ENCFF359DCF.tabix.bed.gz.tbi.dvc | 110.0 B | fb4cd5b533f94c17f756ebe4e08dee76 |
| genomic_resource.yaml | 2.8 KB | 1bc9717f1bea3bbc02a5ec62deed96cd |
| genomic_resource_original.yaml | 2.65 KB | 30bb3b3ec5ca7e1ca5df5ba6c5bc96f1 |
| statistics/ |