| Id: | Histone_ChIP-seq/ENCSR889TEU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR889TEU [biosamplesummary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) with Alzheimer's disease, Cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN518NQU|/analyses/ENCAN518NQU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF505FPU|/files/ENCFF505FPU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF505FPU|/files/ENCFF505FPU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.41. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR889TEU | float |
Histone_ChIP-seq_ENCSR889TEU |
Histone_ChIP-seq ENCSR889TEU [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K27ac"]
|
 |
[1.67, 26.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF024XNY.bed.gz | 2.34 MB | 67cbc384589b8b06c86d9ec3baad04b2 |
| ENCFF024XNY.bed.gz.dvc | 101.0 B | 9ed11bbe76adc330978928a6a880540d |
| ENCFF024XNY.tabix.bed.gz | 1.11 MB | 3bc879592c528f5c5eb9680e2352cbbe |
| ENCFF024XNY.tabix.bed.gz.dvc | 107.0 B | 16bbc90d6dacd1d5c101e0de72e33ba1 |
| ENCFF024XNY.tabix.bed.gz.tbi | 285.02 KB | 1cf5f31bb68029bb118a1eb54749dab3 |
| ENCFF024XNY.tabix.bed.gz.tbi.dvc | 110.0 B | a94bc71db31aa7fece3afecb259e79ed |
| genomic_resource.yaml | 3.08 KB | 7f45df495381575a6843c677201f4f86 |
| genomic_resource_original.yaml | 2.88 KB | b1b70332eb072f8fca9766bd598eb2de |
| statistics/ |